Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnp-ISAs1 and yncI are separated by 575 nucleotides yncI and yncI are separated by 48 nucleotides yncI and ydcD are separated by 180 nucleotides ydcD and NOLOHH_02190 overlap by 17 nucleotides
NOLOHH_02170: tnp-ISAs1 - ISAs1 family transposase, at 339,060 to 340,103
tnp-ISAs1
NOLOHH_02175: yncI - ISAs1 family transposase, at 340,679 to 340,906
yncI
NOLOHH_02180: yncI - ISAs1 family transposase, at 340,955 to 341,425
yncI
NOLOHH_02185: ydcD - Uncharacterized protein YdcD, at 341,606 to 342,088
ydcD
NOLOHH_02190: NOLOHH_02190 - RHS repeat protein, at 342,072 to 343,262
_02190
Position (kb) 340
341
342 Strain fitness (log2 ratio) -2
-1
0
1
2 at 340.456 kb on + strand at 340.551 kb on + strand at 340.577 kb on + strand at 340.640 kb on - strand at 340.821 kb on - strand, within yncI at 341.103 kb on - strand, within yncI at 341.245 kb on - strand, within yncI at 341.400 kb on + strand at 341.480 kb on + strand at 342.035 kb on + strand, within ydcD at 342.312 kb on + strand, within NOLOHH_02190 at 342.332 kb on + strand, within NOLOHH_02190 at 342.352 kb on + strand, within NOLOHH_02190 at 342.352 kb on + strand, within NOLOHH_02190 at 342.352 kb on + strand, within NOLOHH_02190 at 342.353 kb on - strand, within NOLOHH_02190 at 342.401 kb on + strand, within NOLOHH_02190 at 342.402 kb on - strand, within NOLOHH_02190 at 342.410 kb on + strand, within NOLOHH_02190
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 340,456 + +1.8 340,551 + -1.6 340,577 + +1.1 340,640 - +0.3 340,821 - yncI NOLOHH_02175 0.62 +0.5 341,103 - yncI NOLOHH_02180 0.31 -0.5 341,245 - yncI NOLOHH_02180 0.62 -2.0 341,400 + -1.0 341,480 + -0.2 342,035 + ydcD NOLOHH_02185 0.89 +0.7 342,312 + NOLOHH_02190 0.20 -1.7 342,332 + NOLOHH_02190 0.22 +0.2 342,352 + NOLOHH_02190 0.24 +1.3 342,352 + NOLOHH_02190 0.24 +0.8 342,352 + NOLOHH_02190 0.24 -1.3 342,353 - NOLOHH_02190 0.24 -0.3 342,401 + NOLOHH_02190 0.28 +1.4 342,402 - NOLOHH_02190 0.28 -0.2 342,410 + NOLOHH_02190 0.28 +0.3
Or see this region's nucleotide sequence