Experiment: Control_ECOR27
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pdeB and ybaA are separated by 41 nucleotides ybaA and atl are separated by 378 nucleotides atl and ybaY are separated by 30 nucleotides
NOLOHH_01165: pdeB - cyclic-guanylate-specific phosphodiesterase PdeB, at 125,317 to 126,867
pdeB
NOLOHH_01170: ybaA - Uncharacterized protein YbaA, at 126,909 to 127,262
ybaA
NOLOHH_01180: atl - DNA base-flipping protein, at 127,641 to 127,952
atl
NOLOHH_01185: ybaY - Uncharacterized lipoprotein YbaY, at 127,983 to 128,555
ybaY
Position (kb) 126
127
128 Strain fitness (log2 ratio) -2
-1
0
1
2 at 125.913 kb on - strand, within pdeB at 125.986 kb on - strand, within pdeB at 125.986 kb on - strand, within pdeB at 126.165 kb on + strand, within pdeB at 126.256 kb on - strand, within pdeB at 126.331 kb on - strand, within pdeB at 126.333 kb on - strand, within pdeB at 126.352 kb on - strand, within pdeB at 126.609 kb on - strand, within pdeB at 126.613 kb on + strand, within pdeB at 126.614 kb on - strand, within pdeB at 126.618 kb on - strand, within pdeB at 126.811 kb on + strand at 126.812 kb on + strand at 126.812 kb on - strand at 126.910 kb on + strand at 126.910 kb on + strand at 126.911 kb on - strand at 126.911 kb on - strand at 126.940 kb on + strand at 127.173 kb on - strand, within ybaA at 127.256 kb on - strand at 127.256 kb on - strand at 127.256 kb on - strand at 127.256 kb on - strand at 127.256 kb on - strand at 127.256 kb on - strand at 127.256 kb on - strand at 127.256 kb on - strand at 127.256 kb on - strand at 127.270 kb on - strand at 127.270 kb on - strand at 127.270 kb on - strand at 127.270 kb on - strand at 127.270 kb on - strand at 127.282 kb on + strand at 127.283 kb on - strand at 127.612 kb on - strand at 127.612 kb on - strand at 127.612 kb on - strand at 127.612 kb on - strand at 127.624 kb on + strand at 127.692 kb on - strand, within atl at 127.705 kb on - strand, within atl at 127.705 kb on - strand, within atl at 127.716 kb on + strand, within atl at 127.716 kb on + strand, within atl at 127.861 kb on + strand, within atl at 127.861 kb on + strand, within atl at 127.947 kb on + strand at 127.948 kb on - strand at 127.984 kb on + strand at 127.985 kb on - strand at 127.987 kb on + strand at 128.047 kb on - strand, within ybaY at 128.166 kb on - strand, within ybaY at 128.170 kb on - strand, within ybaY at 128.210 kb on + strand, within ybaY at 128.240 kb on + strand, within ybaY at 128.241 kb on - strand, within ybaY at 128.241 kb on - strand, within ybaY at 128.241 kb on - strand, within ybaY
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR27 remove 125,913 - pdeB NOLOHH_01165 0.38 -1.1 125,986 - pdeB NOLOHH_01165 0.43 -0.3 125,986 - pdeB NOLOHH_01165 0.43 -1.8 126,165 + pdeB NOLOHH_01165 0.55 +0.9 126,256 - pdeB NOLOHH_01165 0.61 +0.7 126,331 - pdeB NOLOHH_01165 0.65 +0.1 126,333 - pdeB NOLOHH_01165 0.66 +1.2 126,352 - pdeB NOLOHH_01165 0.67 +2.1 126,609 - pdeB NOLOHH_01165 0.83 +1.2 126,613 + pdeB NOLOHH_01165 0.84 -0.1 126,614 - pdeB NOLOHH_01165 0.84 -0.0 126,618 - pdeB NOLOHH_01165 0.84 -0.3 126,811 + +0.2 126,812 + +0.9 126,812 - +1.8 126,910 + +0.3 126,910 + +0.2 126,911 - +0.7 126,911 - +1.7 126,940 + +0.2 127,173 - ybaA NOLOHH_01170 0.75 -1.0 127,256 - -0.4 127,256 - +0.0 127,256 - -0.5 127,256 - +0.1 127,256 - +0.9 127,256 - -0.1 127,256 - +0.3 127,256 - +0.5 127,256 - +0.9 127,270 - -0.3 127,270 - +0.0 127,270 - +2.6 127,270 - +0.3 127,270 - -1.0 127,282 + -1.5 127,283 - +0.2 127,612 - +0.3 127,612 - -0.7 127,612 - -0.6 127,612 - -0.2 127,624 + -0.3 127,692 - atl NOLOHH_01180 0.16 +0.2 127,705 - atl NOLOHH_01180 0.21 +1.1 127,705 - atl NOLOHH_01180 0.21 +0.6 127,716 + atl NOLOHH_01180 0.24 -0.6 127,716 + atl NOLOHH_01180 0.24 +0.5 127,861 + atl NOLOHH_01180 0.71 +0.5 127,861 + atl NOLOHH_01180 0.71 +0.4 127,947 + +0.4 127,948 - -0.7 127,984 + -2.0 127,985 - -0.0 127,987 + +0.6 128,047 - ybaY NOLOHH_01185 0.11 -0.7 128,166 - ybaY NOLOHH_01185 0.32 -0.2 128,170 - ybaY NOLOHH_01185 0.33 +0.2 128,210 + ybaY NOLOHH_01185 0.40 -0.7 128,240 + ybaY NOLOHH_01185 0.45 -0.8 128,241 - ybaY NOLOHH_01185 0.45 +0.0 128,241 - ybaY NOLOHH_01185 0.45 +1.4 128,241 - ybaY NOLOHH_01185 0.45 -0.6
Or see this region's nucleotide sequence