Experiment: D-Fructose 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS04590 and ABI39_RS04595 are separated by 7 nucleotides ABI39_RS04595 and ABI39_RS04600 are separated by 138 nucleotides ABI39_RS04600 and ABI39_RS04605 are separated by 41 nucleotides
ABI39_RS04590: ABI39_RS04590 - Fe-S cluster assembly protein SufB, at 1,292,716 to 1,294,167
_RS04590
ABI39_RS04595: ABI39_RS04595 - CvpA family protein, at 1,294,175 to 1,294,678
_RS04595
ABI39_RS04600: ABI39_RS04600 - translation initiation factor IF-2, at 1,294,817 to 1,297,828
_RS04600
ABI39_RS04605: ABI39_RS04605 - transcription termination/antitermination protein NusA, at 1,297,870 to 1,299,126
_RS04605
Position (kb)
1294
1295
1296
1297
1298 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1294.200 kb on - strand at 1294.249 kb on - strand, within ABI39_RS04595 at 1294.254 kb on - strand, within ABI39_RS04595 at 1294.309 kb on - strand, within ABI39_RS04595 at 1294.347 kb on + strand, within ABI39_RS04595 at 1294.347 kb on + strand, within ABI39_RS04595 at 1294.461 kb on - strand, within ABI39_RS04595 at 1294.482 kb on - strand, within ABI39_RS04595 at 1294.511 kb on + strand, within ABI39_RS04595 at 1294.583 kb on + strand, within ABI39_RS04595 at 1294.648 kb on + strand at 1294.657 kb on + strand at 1294.657 kb on + strand at 1294.658 kb on - strand at 1294.664 kb on - strand at 1294.664 kb on - strand at 1294.668 kb on - strand at 1294.796 kb on - strand at 1294.815 kb on + strand at 1294.819 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose 2.5 mg/ml (C) remove 1,294,200 - -3.0 1,294,249 - ABI39_RS04595 0.15 -0.3 1,294,254 - ABI39_RS04595 0.16 +0.4 1,294,309 - ABI39_RS04595 0.27 -1.0 1,294,347 + ABI39_RS04595 0.34 -0.4 1,294,347 + ABI39_RS04595 0.34 -0.9 1,294,461 - ABI39_RS04595 0.57 -1.7 1,294,482 - ABI39_RS04595 0.61 +0.0 1,294,511 + ABI39_RS04595 0.67 -1.8 1,294,583 + ABI39_RS04595 0.81 -1.4 1,294,648 + -0.9 1,294,657 + -0.7 1,294,657 + -0.8 1,294,658 - -1.3 1,294,664 - -0.3 1,294,664 - -0.2 1,294,668 - +0.0 1,294,796 - -0.1 1,294,815 + -0.1 1,294,819 - -1.2
Or see this region's nucleotide sequence