Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04600

Experiment: D-Fructose 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS04590 and ABI39_RS04595 are separated by 7 nucleotidesABI39_RS04595 and ABI39_RS04600 are separated by 138 nucleotidesABI39_RS04600 and ABI39_RS04605 are separated by 41 nucleotides ABI39_RS04590: ABI39_RS04590 - Fe-S cluster assembly protein SufB, at 1,292,716 to 1,294,167 _RS04590 ABI39_RS04595: ABI39_RS04595 - CvpA family protein, at 1,294,175 to 1,294,678 _RS04595 ABI39_RS04600: ABI39_RS04600 - translation initiation factor IF-2, at 1,294,817 to 1,297,828 _RS04600 ABI39_RS04605: ABI39_RS04605 - transcription termination/antitermination protein NusA, at 1,297,870 to 1,299,126 _RS04605 Position (kb) 1294 1295 1296 1297 1298Strain fitness (log2 ratio) -3 -2 -1 0 1at 1294.200 kb on - strandat 1294.249 kb on - strand, within ABI39_RS04595at 1294.254 kb on - strand, within ABI39_RS04595at 1294.309 kb on - strand, within ABI39_RS04595at 1294.347 kb on + strand, within ABI39_RS04595at 1294.347 kb on + strand, within ABI39_RS04595at 1294.461 kb on - strand, within ABI39_RS04595at 1294.482 kb on - strand, within ABI39_RS04595at 1294.511 kb on + strand, within ABI39_RS04595at 1294.583 kb on + strand, within ABI39_RS04595at 1294.648 kb on + strandat 1294.657 kb on + strandat 1294.657 kb on + strandat 1294.658 kb on - strandat 1294.664 kb on - strandat 1294.664 kb on - strandat 1294.668 kb on - strandat 1294.796 kb on - strandat 1294.815 kb on + strandat 1294.819 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose 2.5 mg/ml (C)
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1,294,200 - -3.0
1,294,249 - ABI39_RS04595 0.15 -0.3
1,294,254 - ABI39_RS04595 0.16 +0.4
1,294,309 - ABI39_RS04595 0.27 -1.0
1,294,347 + ABI39_RS04595 0.34 -0.4
1,294,347 + ABI39_RS04595 0.34 -0.9
1,294,461 - ABI39_RS04595 0.57 -1.7
1,294,482 - ABI39_RS04595 0.61 +0.0
1,294,511 + ABI39_RS04595 0.67 -1.8
1,294,583 + ABI39_RS04595 0.81 -1.4
1,294,648 + -0.9
1,294,657 + -0.7
1,294,657 + -0.8
1,294,658 - -1.3
1,294,664 - -0.3
1,294,664 - -0.2
1,294,668 - +0.0
1,294,796 - -0.1
1,294,815 + -0.1
1,294,819 - -1.2

Or see this region's nucleotide sequence