Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS00910

Experiment: D-Fructose 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABI39_RS00905 and ABI39_RS00910 are separated by 23 nucleotides ABI39_RS00905: ABI39_RS00905 - RagB/SusD family nutrient uptake outer membrane protein, at 283,269 to 285,581 _RS00905 ABI39_RS00910: ABI39_RS00910 - TonB-dependent receptor, at 285,605 to 288,970 _RS00910 Position (kb) 285 286 287 288 289Strain fitness (log2 ratio) -1 0 1 2at 284.608 kb on + strand, within ABI39_RS00905at 284.608 kb on - strand, within ABI39_RS00905at 284.608 kb on - strand, within ABI39_RS00905at 284.722 kb on + strand, within ABI39_RS00905at 284.749 kb on - strand, within ABI39_RS00905at 284.773 kb on + strand, within ABI39_RS00905at 284.775 kb on + strand, within ABI39_RS00905at 284.775 kb on + strand, within ABI39_RS00905at 284.829 kb on - strand, within ABI39_RS00905at 284.852 kb on - strand, within ABI39_RS00905at 284.915 kb on + strand, within ABI39_RS00905at 284.974 kb on + strand, within ABI39_RS00905at 285.053 kb on + strand, within ABI39_RS00905at 285.056 kb on + strand, within ABI39_RS00905at 285.057 kb on - strand, within ABI39_RS00905at 285.057 kb on - strand, within ABI39_RS00905at 285.057 kb on - strand, within ABI39_RS00905at 285.059 kb on - strand, within ABI39_RS00905at 285.092 kb on + strand, within ABI39_RS00905at 285.093 kb on - strand, within ABI39_RS00905at 285.108 kb on - strand, within ABI39_RS00905at 285.108 kb on - strand, within ABI39_RS00905at 285.176 kb on + strand, within ABI39_RS00905at 285.260 kb on + strand, within ABI39_RS00905at 285.264 kb on - strand, within ABI39_RS00905at 285.266 kb on - strand, within ABI39_RS00905at 285.289 kb on + strand, within ABI39_RS00905at 285.290 kb on - strand, within ABI39_RS00905at 285.331 kb on + strand, within ABI39_RS00905at 285.362 kb on + strandat 285.363 kb on - strandat 285.365 kb on + strandat 285.445 kb on - strandat 285.535 kb on - strandat 285.603 kb on + strandat 285.634 kb on - strandat 285.679 kb on + strandat 285.726 kb on - strandat 285.758 kb on - strandat 285.781 kb on - strandat 285.850 kb on + strandat 285.855 kb on - strandat 285.865 kb on + strandat 285.869 kb on - strandat 285.879 kb on + strandat 285.896 kb on - strandat 285.907 kb on + strandat 285.907 kb on + strandat 285.908 kb on - strandat 285.911 kb on + strandat 285.912 kb on - strandat 285.965 kb on + strand, within ABI39_RS00910at 286.012 kb on - strand, within ABI39_RS00910at 286.012 kb on - strand, within ABI39_RS00910at 286.063 kb on - strand, within ABI39_RS00910at 286.066 kb on + strand, within ABI39_RS00910at 286.072 kb on + strand, within ABI39_RS00910at 286.072 kb on + strand, within ABI39_RS00910at 286.078 kb on + strand, within ABI39_RS00910at 286.121 kb on - strand, within ABI39_RS00910at 286.124 kb on - strand, within ABI39_RS00910at 286.133 kb on - strand, within ABI39_RS00910at 286.161 kb on + strand, within ABI39_RS00910at 286.162 kb on - strand, within ABI39_RS00910at 286.227 kb on - strand, within ABI39_RS00910at 286.268 kb on + strand, within ABI39_RS00910at 286.290 kb on + strand, within ABI39_RS00910at 286.322 kb on - strand, within ABI39_RS00910at 286.366 kb on + strand, within ABI39_RS00910at 286.372 kb on + strand, within ABI39_RS00910at 286.376 kb on + strand, within ABI39_RS00910at 286.376 kb on + strand, within ABI39_RS00910at 286.376 kb on + strand, within ABI39_RS00910at 286.444 kb on + strand, within ABI39_RS00910at 286.493 kb on - strand, within ABI39_RS00910at 286.534 kb on + strand, within ABI39_RS00910at 286.549 kb on + strand, within ABI39_RS00910at 286.617 kb on + strand, within ABI39_RS00910at 286.640 kb on - strand, within ABI39_RS00910at 286.711 kb on + strand, within ABI39_RS00910at 286.719 kb on - strand, within ABI39_RS00910at 286.730 kb on - strand, within ABI39_RS00910at 286.753 kb on + strand, within ABI39_RS00910at 286.754 kb on - strand, within ABI39_RS00910at 286.760 kb on + strand, within ABI39_RS00910at 286.966 kb on + strand, within ABI39_RS00910at 286.967 kb on - strand, within ABI39_RS00910at 287.005 kb on - strand, within ABI39_RS00910at 287.041 kb on - strand, within ABI39_RS00910at 287.063 kb on - strand, within ABI39_RS00910at 287.109 kb on + strand, within ABI39_RS00910at 287.111 kb on - strand, within ABI39_RS00910at 287.111 kb on - strand, within ABI39_RS00910at 287.142 kb on + strand, within ABI39_RS00910at 287.231 kb on - strand, within ABI39_RS00910at 287.252 kb on + strand, within ABI39_RS00910at 287.304 kb on + strand, within ABI39_RS00910at 287.304 kb on + strand, within ABI39_RS00910at 287.382 kb on - strand, within ABI39_RS00910at 287.465 kb on - strand, within ABI39_RS00910at 287.467 kb on - strand, within ABI39_RS00910at 287.514 kb on + strand, within ABI39_RS00910at 287.515 kb on - strand, within ABI39_RS00910at 287.562 kb on + strand, within ABI39_RS00910at 287.563 kb on - strand, within ABI39_RS00910at 287.630 kb on - strand, within ABI39_RS00910at 287.632 kb on + strand, within ABI39_RS00910at 287.641 kb on + strand, within ABI39_RS00910at 287.722 kb on + strand, within ABI39_RS00910at 287.723 kb on - strand, within ABI39_RS00910at 287.779 kb on - strand, within ABI39_RS00910at 287.839 kb on + strand, within ABI39_RS00910at 287.854 kb on + strand, within ABI39_RS00910at 287.903 kb on - strand, within ABI39_RS00910at 287.907 kb on - strand, within ABI39_RS00910at 287.907 kb on - strand, within ABI39_RS00910at 287.925 kb on + strand, within ABI39_RS00910at 287.931 kb on - strand, within ABI39_RS00910at 287.969 kb on - strand, within ABI39_RS00910at 287.971 kb on - strand, within ABI39_RS00910at 287.989 kb on - strand, within ABI39_RS00910at 288.031 kb on + strand, within ABI39_RS00910at 288.076 kb on + strand, within ABI39_RS00910at 288.076 kb on + strand, within ABI39_RS00910at 288.100 kb on - strand, within ABI39_RS00910at 288.103 kb on + strand, within ABI39_RS00910at 288.111 kb on + strand, within ABI39_RS00910at 288.121 kb on + strand, within ABI39_RS00910at 288.121 kb on + strand, within ABI39_RS00910at 288.124 kb on + strand, within ABI39_RS00910at 288.125 kb on - strand, within ABI39_RS00910at 288.128 kb on - strand, within ABI39_RS00910at 288.241 kb on + strand, within ABI39_RS00910at 288.291 kb on + strand, within ABI39_RS00910at 288.292 kb on - strand, within ABI39_RS00910at 288.351 kb on - strand, within ABI39_RS00910at 288.376 kb on + strand, within ABI39_RS00910at 288.376 kb on + strand, within ABI39_RS00910at 288.377 kb on - strand, within ABI39_RS00910at 288.380 kb on + strand, within ABI39_RS00910at 288.397 kb on - strand, within ABI39_RS00910at 288.398 kb on + strand, within ABI39_RS00910at 288.421 kb on + strand, within ABI39_RS00910at 288.422 kb on - strand, within ABI39_RS00910at 288.604 kb on - strand, within ABI39_RS00910at 289.121 kb on - strandat 289.146 kb on - strandat 289.223 kb on + strandat 289.224 kb on - strandat 289.239 kb on + strandat 289.248 kb on + strandat 289.249 kb on - strandat 289.355 kb on + strandat 289.489 kb on - strandat 289.703 kb on + strandat 289.704 kb on - strandat 289.738 kb on + strandat 289.759 kb on + strandat 289.759 kb on + strandat 289.760 kb on - strandat 289.762 kb on + strandat 289.784 kb on + strandat 289.784 kb on + strandat 289.784 kb on + strandat 289.865 kb on + strandat 289.904 kb on + strandat 289.907 kb on - strandat 289.907 kb on - strandat 289.912 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose 2.5 mg/ml (C)
remove
284,608 + ABI39_RS00905 0.58 +0.5
284,608 - ABI39_RS00905 0.58 +0.5
284,608 - ABI39_RS00905 0.58 -0.2
284,722 + ABI39_RS00905 0.63 +0.1
284,749 - ABI39_RS00905 0.64 +0.1
284,773 + ABI39_RS00905 0.65 +0.3
284,775 + ABI39_RS00905 0.65 -0.4
284,775 + ABI39_RS00905 0.65 +0.3
284,829 - ABI39_RS00905 0.67 +0.1
284,852 - ABI39_RS00905 0.68 -0.5
284,915 + ABI39_RS00905 0.71 +0.6
284,974 + ABI39_RS00905 0.74 +0.0
285,053 + ABI39_RS00905 0.77 +0.3
285,056 + ABI39_RS00905 0.77 +0.7
285,057 - ABI39_RS00905 0.77 +0.1
285,057 - ABI39_RS00905 0.77 +0.6
285,057 - ABI39_RS00905 0.77 -0.3
285,059 - ABI39_RS00905 0.77 -0.5
285,092 + ABI39_RS00905 0.79 -0.2
285,093 - ABI39_RS00905 0.79 +0.1
285,108 - ABI39_RS00905 0.80 +0.4
285,108 - ABI39_RS00905 0.80 -0.2
285,176 + ABI39_RS00905 0.82 +0.4
285,260 + ABI39_RS00905 0.86 +0.5
285,264 - ABI39_RS00905 0.86 +0.3
285,266 - ABI39_RS00905 0.86 +0.4
285,289 + ABI39_RS00905 0.87 +0.9
285,290 - ABI39_RS00905 0.87 +0.2
285,331 + ABI39_RS00905 0.89 +0.7
285,362 + +0.4
285,363 - +0.6
285,365 + +0.4
285,445 - -0.1
285,535 - +0.1
285,603 + -0.3
285,634 - +0.6
285,679 + +0.0
285,726 - +0.4
285,758 - +0.8
285,781 - -0.3
285,850 + +0.7
285,855 - +0.3
285,865 + -0.2
285,869 - +1.3
285,879 + +0.8
285,896 - +2.7
285,907 + +1.5
285,907 + +0.1
285,908 - -0.1
285,911 + -0.2
285,912 - -0.9
285,965 + ABI39_RS00910 0.11 +0.8
286,012 - ABI39_RS00910 0.12 -0.0
286,012 - ABI39_RS00910 0.12 +0.1
286,063 - ABI39_RS00910 0.14 +0.0
286,066 + ABI39_RS00910 0.14 +0.5
286,072 + ABI39_RS00910 0.14 +0.5
286,072 + ABI39_RS00910 0.14 +0.8
286,078 + ABI39_RS00910 0.14 +0.8
286,121 - ABI39_RS00910 0.15 +0.6
286,124 - ABI39_RS00910 0.15 -0.1
286,133 - ABI39_RS00910 0.16 -0.0
286,161 + ABI39_RS00910 0.17 +1.1
286,162 - ABI39_RS00910 0.17 +1.0
286,227 - ABI39_RS00910 0.18 +0.0
286,268 + ABI39_RS00910 0.20 +0.8
286,290 + ABI39_RS00910 0.20 +0.5
286,322 - ABI39_RS00910 0.21 +1.4
286,366 + ABI39_RS00910 0.23 +0.5
286,372 + ABI39_RS00910 0.23 +0.5
286,376 + ABI39_RS00910 0.23 +0.2
286,376 + ABI39_RS00910 0.23 +0.6
286,376 + ABI39_RS00910 0.23 +0.5
286,444 + ABI39_RS00910 0.25 +0.3
286,493 - ABI39_RS00910 0.26 -0.3
286,534 + ABI39_RS00910 0.28 +0.5
286,549 + ABI39_RS00910 0.28 +0.3
286,617 + ABI39_RS00910 0.30 +0.4
286,640 - ABI39_RS00910 0.31 -0.8
286,711 + ABI39_RS00910 0.33 +0.3
286,719 - ABI39_RS00910 0.33 +0.4
286,730 - ABI39_RS00910 0.33 -0.0
286,753 + ABI39_RS00910 0.34 +0.7
286,754 - ABI39_RS00910 0.34 -1.3
286,760 + ABI39_RS00910 0.34 -0.3
286,966 + ABI39_RS00910 0.40 -0.2
286,967 - ABI39_RS00910 0.40 +0.8
287,005 - ABI39_RS00910 0.42 +1.5
287,041 - ABI39_RS00910 0.43 -0.4
287,063 - ABI39_RS00910 0.43 +0.5
287,109 + ABI39_RS00910 0.45 -0.2
287,111 - ABI39_RS00910 0.45 +0.6
287,111 - ABI39_RS00910 0.45 -0.0
287,142 + ABI39_RS00910 0.46 -0.7
287,231 - ABI39_RS00910 0.48 +0.2
287,252 + ABI39_RS00910 0.49 -0.5
287,304 + ABI39_RS00910 0.50 +0.6
287,304 + ABI39_RS00910 0.50 +0.5
287,382 - ABI39_RS00910 0.53 +0.4
287,465 - ABI39_RS00910 0.55 +0.5
287,467 - ABI39_RS00910 0.55 -0.7
287,514 + ABI39_RS00910 0.57 +0.5
287,515 - ABI39_RS00910 0.57 +0.4
287,562 + ABI39_RS00910 0.58 -0.0
287,563 - ABI39_RS00910 0.58 +0.5
287,630 - ABI39_RS00910 0.60 -0.5
287,632 + ABI39_RS00910 0.60 -0.6
287,641 + ABI39_RS00910 0.60 +0.9
287,722 + ABI39_RS00910 0.63 -0.0
287,723 - ABI39_RS00910 0.63 +0.5
287,779 - ABI39_RS00910 0.65 +0.6
287,839 + ABI39_RS00910 0.66 +0.9
287,854 + ABI39_RS00910 0.67 +0.2
287,903 - ABI39_RS00910 0.68 +0.1
287,907 - ABI39_RS00910 0.68 -0.3
287,907 - ABI39_RS00910 0.68 +0.2
287,925 + ABI39_RS00910 0.69 +0.6
287,931 - ABI39_RS00910 0.69 +0.7
287,969 - ABI39_RS00910 0.70 +0.2
287,971 - ABI39_RS00910 0.70 +1.2
287,989 - ABI39_RS00910 0.71 +0.3
288,031 + ABI39_RS00910 0.72 -0.4
288,076 + ABI39_RS00910 0.73 +0.4
288,076 + ABI39_RS00910 0.73 +0.1
288,100 - ABI39_RS00910 0.74 +0.1
288,103 + ABI39_RS00910 0.74 -0.9
288,111 + ABI39_RS00910 0.74 -0.1
288,121 + ABI39_RS00910 0.75 -0.7
288,121 + ABI39_RS00910 0.75 +0.4
288,124 + ABI39_RS00910 0.75 -0.1
288,125 - ABI39_RS00910 0.75 +0.5
288,128 - ABI39_RS00910 0.75 -1.0
288,241 + ABI39_RS00910 0.78 +1.1
288,291 + ABI39_RS00910 0.80 +0.7
288,292 - ABI39_RS00910 0.80 +0.4
288,351 - ABI39_RS00910 0.82 -0.0
288,376 + ABI39_RS00910 0.82 +0.5
288,376 + ABI39_RS00910 0.82 +0.3
288,377 - ABI39_RS00910 0.82 +0.3
288,380 + ABI39_RS00910 0.82 +0.5
288,397 - ABI39_RS00910 0.83 -0.9
288,398 + ABI39_RS00910 0.83 -0.2
288,421 + ABI39_RS00910 0.84 -0.1
288,422 - ABI39_RS00910 0.84 -0.1
288,604 - ABI39_RS00910 0.89 +0.4
289,121 - -0.0
289,146 - +0.2
289,223 + +0.2
289,224 - +0.1
289,239 + -0.6
289,248 + +0.5
289,249 - +0.2
289,355 + +0.3
289,489 - -0.5
289,703 + +0.3
289,704 - +0.4
289,738 + +0.5
289,759 + +0.9
289,759 + +0.5
289,760 - +0.9
289,762 + +0.4
289,784 + +1.1
289,784 + +0.2
289,784 + -0.2
289,865 + +0.4
289,904 + -0.5
289,907 - +0.3
289,907 - +0.4
289,912 + -0.3

Or see this region's nucleotide sequence