Experiment: Locust bean gum; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS21190 and ABI39_RS21195 are separated by 12 nucleotides ABI39_RS21195 and ABI39_RS21200 are separated by 18 nucleotides
ABI39_RS21190: ABI39_RS21190 - dihydrodipicolinate synthase family protein, at 5,216,980 to 5,217,894
_RS21190
ABI39_RS21195: ABI39_RS21195 - AGE family epimerase/isomerase, at 5,217,907 to 5,219,103
_RS21195
ABI39_RS21200: ABI39_RS21200 - MFS transporter, at 5,219,122 to 5,220,357
_RS21200
Position (kb) 5217
5218
5219
5220 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5217.016 kb on - strand at 5217.026 kb on - strand at 5217.047 kb on - strand at 5217.064 kb on + strand at 5217.130 kb on + strand, within ABI39_RS21190 at 5217.133 kb on - strand, within ABI39_RS21190 at 5217.183 kb on - strand, within ABI39_RS21190 at 5217.353 kb on + strand, within ABI39_RS21190 at 5217.500 kb on - strand, within ABI39_RS21190 at 5217.506 kb on - strand, within ABI39_RS21190 at 5217.918 kb on - strand at 5217.991 kb on + strand at 5218.018 kb on - strand at 5218.021 kb on + strand at 5218.021 kb on + strand at 5218.021 kb on + strand at 5218.022 kb on - strand at 5218.022 kb on - strand at 5218.096 kb on - strand, within ABI39_RS21195 at 5218.096 kb on - strand, within ABI39_RS21195 at 5218.105 kb on + strand, within ABI39_RS21195 at 5218.112 kb on - strand, within ABI39_RS21195 at 5218.113 kb on + strand, within ABI39_RS21195 at 5218.114 kb on - strand, within ABI39_RS21195 at 5218.116 kb on + strand, within ABI39_RS21195 at 5218.117 kb on - strand, within ABI39_RS21195 at 5218.163 kb on + strand, within ABI39_RS21195 at 5218.164 kb on - strand, within ABI39_RS21195 at 5218.204 kb on - strand, within ABI39_RS21195 at 5218.321 kb on + strand, within ABI39_RS21195 at 5218.322 kb on - strand, within ABI39_RS21195 at 5218.571 kb on + strand, within ABI39_RS21195 at 5218.633 kb on - strand, within ABI39_RS21195 at 5218.851 kb on + strand, within ABI39_RS21195 at 5218.865 kb on - strand, within ABI39_RS21195 at 5218.865 kb on - strand, within ABI39_RS21195 at 5219.058 kb on + strand at 5219.059 kb on - strand at 5219.115 kb on + strand at 5219.115 kb on + strand at 5219.116 kb on - strand at 5219.118 kb on + strand at 5219.154 kb on - strand at 5219.163 kb on - strand at 5219.188 kb on + strand at 5219.307 kb on + strand, within ABI39_RS21200 at 5219.307 kb on + strand, within ABI39_RS21200 at 5219.316 kb on + strand, within ABI39_RS21200 at 5219.379 kb on - strand, within ABI39_RS21200 at 5219.396 kb on - strand, within ABI39_RS21200 at 5219.420 kb on - strand, within ABI39_RS21200 at 5219.470 kb on + strand, within ABI39_RS21200 at 5219.528 kb on + strand, within ABI39_RS21200 at 5219.617 kb on - strand, within ABI39_RS21200 at 5219.617 kb on - strand, within ABI39_RS21200 at 5219.715 kb on - strand, within ABI39_RS21200 at 5219.775 kb on + strand, within ABI39_RS21200 at 5219.778 kb on + strand, within ABI39_RS21200 at 5219.967 kb on + strand, within ABI39_RS21200
Per-strain Table
Position Strand Gene LocusTag Fraction Locust bean gum; autoclaved 2.5 mg/ml (C) remove 5,217,016 - +1.7 5,217,026 - +0.4 5,217,047 - -0.9 5,217,064 + +0.8 5,217,130 + ABI39_RS21190 0.16 +1.1 5,217,133 - ABI39_RS21190 0.17 -0.9 5,217,183 - ABI39_RS21190 0.22 -2.9 5,217,353 + ABI39_RS21190 0.41 -0.4 5,217,500 - ABI39_RS21190 0.57 +1.2 5,217,506 - ABI39_RS21190 0.57 +0.1 5,217,918 - +0.3 5,217,991 + -0.1 5,218,018 - -0.4 5,218,021 + -0.0 5,218,021 + +0.7 5,218,021 + -0.9 5,218,022 - -2.6 5,218,022 - -1.3 5,218,096 - ABI39_RS21195 0.16 +0.0 5,218,096 - ABI39_RS21195 0.16 -2.3 5,218,105 + ABI39_RS21195 0.17 -0.5 5,218,112 - ABI39_RS21195 0.17 -2.4 5,218,113 + ABI39_RS21195 0.17 +0.4 5,218,114 - ABI39_RS21195 0.17 +0.3 5,218,116 + ABI39_RS21195 0.17 +0.0 5,218,117 - ABI39_RS21195 0.18 -0.8 5,218,163 + ABI39_RS21195 0.21 +0.3 5,218,164 - ABI39_RS21195 0.21 -0.6 5,218,204 - ABI39_RS21195 0.25 -3.4 5,218,321 + ABI39_RS21195 0.35 +0.1 5,218,322 - ABI39_RS21195 0.35 +0.0 5,218,571 + ABI39_RS21195 0.55 +0.3 5,218,633 - ABI39_RS21195 0.61 -1.9 5,218,851 + ABI39_RS21195 0.79 -1.1 5,218,865 - ABI39_RS21195 0.80 -1.2 5,218,865 - ABI39_RS21195 0.80 -2.0 5,219,058 + -0.0 5,219,059 - -3.3 5,219,115 + -3.4 5,219,115 + -1.9 5,219,116 - -0.7 5,219,118 + -0.5 5,219,154 - -0.9 5,219,163 - -1.6 5,219,188 + +1.4 5,219,307 + ABI39_RS21200 0.15 -0.6 5,219,307 + ABI39_RS21200 0.15 -0.8 5,219,316 + ABI39_RS21200 0.16 -2.5 5,219,379 - ABI39_RS21200 0.21 -1.0 5,219,396 - ABI39_RS21200 0.22 +0.5 5,219,420 - ABI39_RS21200 0.24 -1.6 5,219,470 + ABI39_RS21200 0.28 -0.1 5,219,528 + ABI39_RS21200 0.33 -2.5 5,219,617 - ABI39_RS21200 0.40 -2.6 5,219,617 - ABI39_RS21200 0.40 -2.7 5,219,715 - ABI39_RS21200 0.48 +1.2 5,219,775 + ABI39_RS21200 0.53 +0.6 5,219,778 + ABI39_RS21200 0.53 +0.0 5,219,967 + ABI39_RS21200 0.68 -2.8
Or see this region's nucleotide sequence