Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS15815

Experiment: Locust bean gum; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Locust bean gum; autoclaved 2.5 mg/ml (C)
4,070,983	+		ABI39_RS15800	0.50	+0.5
4,070,986	-		ABI39_RS15800	0.51	-1.6
4,070,986	-		ABI39_RS15800	0.51	+0.6
4,071,093	-		ABI39_RS15800	0.69	-0.3
4,071,204	-		ABI39_RS15800	0.88	+0.4
4,071,404	+				+0.1
4,071,499	+		ABI39_RS15810	0.10	+0.2
4,071,552	+		ABI39_RS15810	0.24	+0.2
4,071,701	+		ABI39_RS15810	0.62	-0.6
4,071,750	+		ABI39_RS15810	0.74	-0.4
4,071,752	+		ABI39_RS15810	0.75	-1.5
4,071,760	-		ABI39_RS15810	0.77	-0.3
4,071,830	-				-0.5
4,072,069	-				+0.6
4,072,101	+				+0.8
4,072,102	-				-0.2
4,072,119	+		ABI39_RS15815	0.10	-0.6
4,072,122	+		ABI39_RS15815	0.10	-1.1
4,072,172	+		ABI39_RS15815	0.12	-0.6
4,072,177	-		ABI39_RS15815	0.12	+0.2
4,072,260	+		ABI39_RS15815	0.16	+0.0
4,072,277	+		ABI39_RS15815	0.16	+0.2
4,072,337	+		ABI39_RS15815	0.19	-1.2
4,072,354	+		ABI39_RS15815	0.19	-0.5
4,072,413	-		ABI39_RS15815	0.22	+0.5
4,072,413	-		ABI39_RS15815	0.22	+0.0
4,072,425	+		ABI39_RS15815	0.22	+0.5
4,072,426	-		ABI39_RS15815	0.22	-2.7
4,072,608	+		ABI39_RS15815	0.29	-1.2
4,072,613	+		ABI39_RS15815	0.30	+0.0
4,072,788	+		ABI39_RS15815	0.37	-0.4
4,072,883	-		ABI39_RS15815	0.40	-0.4
4,072,883	-		ABI39_RS15815	0.40	-0.6
4,073,206	-		ABI39_RS15815	0.53	-1.2
4,073,323	-		ABI39_RS15815	0.58	-0.2
4,073,401	+		ABI39_RS15815	0.61	-0.6
4,073,401	+		ABI39_RS15815	0.61	-2.2
4,073,408	-		ABI39_RS15815	0.61	-0.1
4,073,411	+		ABI39_RS15815	0.61	-0.3
4,073,412	-		ABI39_RS15815	0.61	+0.8
4,073,482	+		ABI39_RS15815	0.64	-0.1
4,073,641	+		ABI39_RS15815	0.71	-0.6
4,073,641	+		ABI39_RS15815	0.71	-1.2
4,073,776	+		ABI39_RS15815	0.76	-1.6
4,073,815	+		ABI39_RS15815	0.77	+1.2
4,073,816	-		ABI39_RS15815	0.77	-0.6
4,073,847	+		ABI39_RS15815	0.79	+0.3
4,073,886	+		ABI39_RS15815	0.80	+0.3
4,073,928	+		ABI39_RS15815	0.82	-0.3
4,073,962	+		ABI39_RS15815	0.83	+0.1
4,073,962	+		ABI39_RS15815	0.83	-2.0
4,073,962	+		ABI39_RS15815	0.83	-0.6
4,073,964	+		ABI39_RS15815	0.83	-0.7
4,073,964	+		ABI39_RS15815	0.83	-0.7
4,073,965	-		ABI39_RS15815	0.83	-0.4
4,073,965	-		ABI39_RS15815	0.83	+1.0
4,073,966	+		ABI39_RS15815	0.83	+0.4
4,073,966	+		ABI39_RS15815	0.83	-0.5
4,073,966	+		ABI39_RS15815	0.83	-0.1
4,073,967	-		ABI39_RS15815	0.83	-0.2
4,074,026	-		ABI39_RS15815	0.86	+0.1
4,074,240	-				+0.4
4,074,274	+				+0.0
4,074,275	-				+1.3
4,074,283	-				+0.4
4,074,320	+				-0.0
4,074,320	+				+0.2
4,074,388	+				-3.4
4,074,389	-				-1.0
4,074,439	-		ABI39_RS22255	0.19	+0.4
4,074,495	+		ABI39_RS22255	0.36	-0.7
4,074,593	-		ABI39_RS22255	0.67	+0.8
4,074,611	+		ABI39_RS22255	0.73	+0.2
4,074,804	+		ABI39_RS15820	0.40	-1.3
4,074,869	+		ABI39_RS15820	0.68	+1.0
4,074,933	+				+0.5
4,075,058	-				-1.2
4,075,118	-				-0.2
4,075,158	+				+0.3
4,075,208	+		ABI39_RS15825	0.14	-0.5
4,075,369	-		ABI39_RS15825	0.38	-0.1