Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS06085

Experiment: Locust bean gum; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Locust bean gum; autoclaved 2.5 mg/ml (C)
1,689,238	-		ABI39_RS06075	0.71	-0.1
1,689,268	+		ABI39_RS06075	0.74	+1.0
1,689,270	+		ABI39_RS06075	0.74	+0.6
1,689,271	-		ABI39_RS06075	0.74	+0.6
1,689,302	-		ABI39_RS06075	0.77	-1.5
1,689,435	+				+0.5
1,689,436	-				+0.3
1,689,488	+				+1.1
1,689,526	-				-0.1
1,689,539	-				-0.4
1,689,546	+				+1.4
1,689,647	+				+2.0
1,689,648	-				+0.7
1,689,707	-		ABI39_RS06080	0.15	-0.4
1,689,708	-		ABI39_RS06080	0.15	-1.2
1,689,911	+		ABI39_RS06080	0.57	+1.0
1,690,099	+				-0.4
1,690,099	+				+0.4
1,690,279	+		ABI39_RS06085	0.34	+0.3
1,690,303	+		ABI39_RS06085	0.45	+0.2
1,690,324	+		ABI39_RS06085	0.55	+0.5
1,690,343	-		ABI39_RS06085	0.64	+0.4
1,690,343	-		ABI39_RS06085	0.64	-0.2
1,690,344	+		ABI39_RS06085	0.65	+0.8
1,690,430	-				+0.1
1,690,432	+				-1.3
1,690,532	-		ABI39_RS06090	0.44	-0.3
1,690,658	+				+0.6
1,690,658	+				+0.5
1,690,721	+				+0.3
1,690,804	+				+0.5
1,690,807	+				+0.4
1,690,835	-		ABI39_RS06095	0.11	+0.3
1,690,869	-		ABI39_RS06095	0.14	+0.1
1,690,891	+		ABI39_RS06095	0.17	+0.3
1,690,948	+		ABI39_RS06095	0.23	+0.4
1,691,052	-		ABI39_RS06095	0.34	-0.4
1,691,052	-		ABI39_RS06095	0.34	-0.7
1,691,127	-		ABI39_RS06095	0.43	-0.0
1,691,170	+		ABI39_RS06095	0.47	-0.7
1,691,232	+		ABI39_RS06095	0.54	+0.4
1,691,246	+		ABI39_RS06095	0.56	+0.6