Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS05925

Experiment: Locust bean gum; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Locust bean gum; autoclaved 2.5 mg/ml (C)
1,642,717	+		ABI39_RS05920	0.65	+0.6
1,642,847	+		ABI39_RS05920	0.70	+0.1
1,642,868	+		ABI39_RS05920	0.71	+0.3
1,642,868	+		ABI39_RS05920	0.71	+0.6
1,642,869	-		ABI39_RS05920	0.71	+0.5
1,643,165	+		ABI39_RS05920	0.83	+0.1
1,643,165	+		ABI39_RS05920	0.83	-3.3
1,643,327	+				+0.6
1,643,333	+				-0.3
1,643,367	+				-2.6
1,643,368	-				+0.1
1,643,538	+				-0.5
1,643,538	+				-0.5
1,643,539	-				-0.2
1,643,539	-				+0.4
1,643,581	-				-0.6
1,643,582	+				-0.1
1,643,583	-				-0.4
1,643,685	-				+0.0
1,643,704	+				-0.2
1,643,708	+				-0.6
1,643,711	+				+0.2
1,643,779	+				-0.5
1,643,978	+		ABI39_RS05925	0.12	-0.3
1,643,978	+		ABI39_RS05925	0.12	+0.6
1,644,000	+		ABI39_RS05925	0.13	+0.2
1,644,040	-		ABI39_RS05925	0.15	-0.6
1,644,096	+		ABI39_RS05925	0.17	+0.6
1,644,186	+		ABI39_RS05925	0.21	-0.5
1,644,205	+		ABI39_RS05925	0.21	-0.4
1,644,284	-		ABI39_RS05925	0.25	+0.9
1,644,516	+		ABI39_RS05925	0.34	+0.1
1,644,517	-		ABI39_RS05925	0.34	-0.7
1,644,517	-		ABI39_RS05925	0.34	+1.1
1,644,518	+		ABI39_RS05925	0.34	+0.3
1,644,518	+		ABI39_RS05925	0.34	+0.2
1,644,518	+		ABI39_RS05925	0.34	-0.9
1,644,519	-		ABI39_RS05925	0.34	+0.9
1,644,521	-		ABI39_RS05925	0.34	-0.3
1,644,522	+		ABI39_RS05925	0.35	+0.4
1,644,523	-		ABI39_RS05925	0.35	-0.3
1,644,569	+		ABI39_RS05925	0.36	-0.5
1,644,596	+		ABI39_RS05925	0.38	-0.2
1,644,686	+		ABI39_RS05925	0.41	+0.0
1,644,730	-		ABI39_RS05925	0.43	-0.4
1,644,798	+		ABI39_RS05925	0.46	-1.6
1,645,029	-		ABI39_RS05925	0.56	+0.3
1,645,060	-		ABI39_RS05925	0.57	+1.1
1,645,245	-		ABI39_RS05925	0.65	-0.4
1,645,290	-		ABI39_RS05925	0.66	+1.2
1,645,392	+		ABI39_RS05925	0.71	-0.7
1,645,439	+		ABI39_RS05925	0.73	+0.4
1,645,493	+		ABI39_RS05925	0.75	+0.2
1,645,587	+		ABI39_RS05925	0.79	+0.0
1,645,588	+		ABI39_RS05925	0.79	-1.8
1,645,588	-		ABI39_RS05925	0.79	+0.1
1,645,642	+		ABI39_RS05925	0.81	-0.3
1,645,661	+		ABI39_RS05925	0.82	+1.4
1,645,861	+				+1.4
1,645,923	+				-2.2
1,645,971	+				-0.3
1,646,119	+				+0.6
1,646,125	-				+0.3
1,646,322	+				-0.2
1,646,322	+				+0.7
1,646,328	+				+0.4
1,646,483	-		ABI39_RS05930	0.17	-0.1
1,646,636	-		ABI39_RS05930	0.24	-0.9
1,646,654	+		ABI39_RS05930	0.24	+0.6
1,646,658	+		ABI39_RS05930	0.25	+0.3
1,646,659	-		ABI39_RS05930	0.25	+0.8
1,646,801	+		ABI39_RS05930	0.31	+0.0
1,646,802	-		ABI39_RS05930	0.31	+0.2
1,646,804	+		ABI39_RS05930	0.31	+0.2
1,646,903	+		ABI39_RS05930	0.35	+0.3
1,646,967	+		ABI39_RS05930	0.38	-1.7
1,646,967	+		ABI39_RS05930	0.38	-0.0
1,646,968	-		ABI39_RS05930	0.38	-1.4
1,646,970	-		ABI39_RS05930	0.38	+0.4