Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS14865

Experiment: Locust bean gum; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Locust bean gum; autoclaved 2.5 mg/ml (C)
3,858,182	-				+0.3
3,858,230	+				-0.6
3,858,321	+				+0.2
3,859,239	-		ABI39_RS14865	0.12	-0.6
3,859,243	-		ABI39_RS14865	0.12	+0.5
3,859,335	+		ABI39_RS14865	0.19	-1.2
3,859,336	-		ABI39_RS14865	0.19	+0.8
3,859,407	-		ABI39_RS14865	0.24	+0.3
3,859,559	+		ABI39_RS14865	0.34	-1.1
3,859,722	+		ABI39_RS14865	0.45	+0.7
3,859,723	-		ABI39_RS14865	0.45	+0.0
3,859,778	-		ABI39_RS14865	0.49	+0.6
3,859,907	+		ABI39_RS14865	0.57	-0.3
3,859,908	-		ABI39_RS14865	0.57	+0.2
3,859,951	-		ABI39_RS14865	0.60	-1.1
3,860,037	+		ABI39_RS14865	0.66	-0.3
3,860,038	-		ABI39_RS14865	0.66	-0.9
3,860,194	-		ABI39_RS14865	0.77	+0.3
3,860,224	-		ABI39_RS14865	0.79	+0.4
3,860,256	+		ABI39_RS14865	0.81	-0.8
3,860,323	-		ABI39_RS14865	0.85	-0.1
3,860,323	-		ABI39_RS14865	0.85	+0.8
3,860,323	-		ABI39_RS14865	0.85	+0.8
3,860,410	+				-1.4
3,860,413	-				-0.4
3,860,510	+				-0.2
3,860,734	+		ABI39_RS14870	0.19	-0.1
3,860,735	-		ABI39_RS14870	0.19	+0.1
3,860,813	-		ABI39_RS14870	0.32	+1.4
3,860,813	-		ABI39_RS14870	0.32	+1.0
3,861,172	+		ABI39_RS14870	0.90	+0.4
3,861,205	-				-1.2
3,861,233	+				+0.3
3,861,302	-				+1.7
3,861,397	+		ABI39_RS14875	0.30	+1.1
3,861,397	+		ABI39_RS14875	0.30	+0.6
3,861,398	-		ABI39_RS14875	0.30	+1.5
3,861,539	+		ABI39_RS14875	0.60	+0.7