Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS19575

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS19560 and ABI39_RS19565 overlap by 4 nucleotidesABI39_RS19565 and ABI39_RS19570 overlap by 4 nucleotidesABI39_RS19570 and ABI39_RS19575 are separated by 1 nucleotidesABI39_RS19575 and ABI39_RS19580 overlap by 17 nucleotidesABI39_RS19580 and ABI39_RS19585 are separated by 90 nucleotides ABI39_RS19560: ABI39_RS19560 - RNA-splicing ligase RtcB, at 4,872,491 to 4,873,756 _RS19560 ABI39_RS19565: ABI39_RS19565 - hypothetical protein, at 4,873,753 to 4,874,160 _RS19565 ABI39_RS19570: ABI39_RS19570 - hypothetical protein, at 4,874,157 to 4,874,672 _RS19570 ABI39_RS19575: ABI39_RS19575 - hypothetical protein, at 4,874,674 to 4,875,075 _RS19575 ABI39_RS19580: ABI39_RS19580 - hypothetical protein, at 4,875,059 to 4,875,352 _RS19580 ABI39_RS19585: ABI39_RS19585 - hypothetical protein, at 4,875,443 to 4,876,108 _RS19585 Position (kb) 4874 4875 4876Strain fitness (log2 ratio) -1 0 1 2at 4873.779 kb on + strandat 4874.017 kb on + strand, within ABI39_RS19565at 4874.022 kb on + strand, within ABI39_RS19565at 4874.071 kb on + strand, within ABI39_RS19565at 4874.071 kb on + strand, within ABI39_RS19565at 4874.072 kb on - strand, within ABI39_RS19565at 4874.084 kb on + strand, within ABI39_RS19565at 4874.085 kb on - strand, within ABI39_RS19565at 4874.085 kb on - strand, within ABI39_RS19565at 4874.263 kb on + strand, within ABI39_RS19570at 4874.298 kb on + strand, within ABI39_RS19570at 4874.356 kb on - strand, within ABI39_RS19570at 4874.397 kb on - strand, within ABI39_RS19570at 4874.403 kb on + strand, within ABI39_RS19570at 4874.415 kb on - strand, within ABI39_RS19570at 4874.417 kb on - strand, within ABI39_RS19570at 4874.468 kb on + strand, within ABI39_RS19570at 4874.521 kb on - strand, within ABI39_RS19570at 4874.591 kb on + strand, within ABI39_RS19570at 4874.670 kb on + strandat 4874.682 kb on - strandat 4874.727 kb on + strand, within ABI39_RS19575at 4874.728 kb on - strand, within ABI39_RS19575at 4874.728 kb on - strand, within ABI39_RS19575at 4874.774 kb on - strand, within ABI39_RS19575at 4874.848 kb on + strand, within ABI39_RS19575at 4874.913 kb on + strand, within ABI39_RS19575at 4874.960 kb on - strand, within ABI39_RS19575at 4874.980 kb on - strand, within ABI39_RS19575at 4875.051 kb on + strandat 4875.092 kb on + strand, within ABI39_RS19580at 4875.106 kb on - strand, within ABI39_RS19580at 4875.136 kb on + strand, within ABI39_RS19580at 4875.137 kb on - strand, within ABI39_RS19580at 4875.228 kb on + strand, within ABI39_RS19580at 4875.256 kb on - strand, within ABI39_RS19580at 4875.412 kb on + strandat 4875.424 kb on - strandat 4875.510 kb on + strand, within ABI39_RS19585at 4875.510 kb on + strand, within ABI39_RS19585at 4875.512 kb on + strand, within ABI39_RS19585at 4875.519 kb on + strand, within ABI39_RS19585at 4875.520 kb on - strand, within ABI39_RS19585at 4875.520 kb on - strand, within ABI39_RS19585at 4875.707 kb on + strand, within ABI39_RS19585at 4875.707 kb on + strand, within ABI39_RS19585at 4875.881 kb on + strand, within ABI39_RS19585at 4875.883 kb on + strand, within ABI39_RS19585at 4875.884 kb on - strand, within ABI39_RS19585at 4875.931 kb on + strand, within ABI39_RS19585at 4875.961 kb on - strand, within ABI39_RS19585at 4875.961 kb on - strand, within ABI39_RS19585at 4876.023 kb on + strand, within ABI39_RS19585at 4876.023 kb on + strand, within ABI39_RS19585at 4876.024 kb on - strand, within ABI39_RS19585

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
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4,873,779 + -0.4
4,874,017 + ABI39_RS19565 0.65 -0.1
4,874,022 + ABI39_RS19565 0.66 +0.5
4,874,071 + ABI39_RS19565 0.78 -0.4
4,874,071 + ABI39_RS19565 0.78 +1.3
4,874,072 - ABI39_RS19565 0.78 +1.0
4,874,084 + ABI39_RS19565 0.81 +1.2
4,874,085 - ABI39_RS19565 0.81 +0.4
4,874,085 - ABI39_RS19565 0.81 +0.4
4,874,263 + ABI39_RS19570 0.21 -0.5
4,874,298 + ABI39_RS19570 0.27 +0.7
4,874,356 - ABI39_RS19570 0.39 -0.3
4,874,397 - ABI39_RS19570 0.47 +0.6
4,874,403 + ABI39_RS19570 0.48 +0.1
4,874,415 - ABI39_RS19570 0.50 +0.4
4,874,417 - ABI39_RS19570 0.50 +0.3
4,874,468 + ABI39_RS19570 0.60 +1.3
4,874,521 - ABI39_RS19570 0.71 +0.9
4,874,591 + ABI39_RS19570 0.84 -1.0
4,874,670 + +1.1
4,874,682 - +0.5
4,874,727 + ABI39_RS19575 0.13 +1.1
4,874,728 - ABI39_RS19575 0.13 +0.1
4,874,728 - ABI39_RS19575 0.13 +0.7
4,874,774 - ABI39_RS19575 0.25 +0.1
4,874,848 + ABI39_RS19575 0.43 -0.2
4,874,913 + ABI39_RS19575 0.59 -0.2
4,874,960 - ABI39_RS19575 0.71 +1.2
4,874,980 - ABI39_RS19575 0.76 +0.8
4,875,051 + +0.3
4,875,092 + ABI39_RS19580 0.11 +0.8
4,875,106 - ABI39_RS19580 0.16 -0.5
4,875,136 + ABI39_RS19580 0.26 -0.6
4,875,137 - ABI39_RS19580 0.27 +0.0
4,875,228 + ABI39_RS19580 0.57 -0.2
4,875,256 - ABI39_RS19580 0.67 -0.7
4,875,412 + -0.2
4,875,424 - +0.4
4,875,510 + ABI39_RS19585 0.10 +1.5
4,875,510 + ABI39_RS19585 0.10 +1.1
4,875,512 + ABI39_RS19585 0.10 +1.4
4,875,519 + ABI39_RS19585 0.11 +1.2
4,875,520 - ABI39_RS19585 0.12 +0.2
4,875,520 - ABI39_RS19585 0.12 +0.3
4,875,707 + ABI39_RS19585 0.40 +2.0
4,875,707 + ABI39_RS19585 0.40 +0.4
4,875,881 + ABI39_RS19585 0.66 -0.3
4,875,883 + ABI39_RS19585 0.66 +1.2
4,875,884 - ABI39_RS19585 0.66 -1.2
4,875,931 + ABI39_RS19585 0.73 +1.9
4,875,961 - ABI39_RS19585 0.78 -0.0
4,875,961 - ABI39_RS19585 0.78 -0.2
4,876,023 + ABI39_RS19585 0.87 +1.7
4,876,023 + ABI39_RS19585 0.87 +1.2
4,876,024 - ABI39_RS19585 0.87 -0.6

Or see this region's nucleotide sequence