Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS13570

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
3,538,027	-		ABI39_RS13560	0.39	-0.1
3,538,043	+		ABI39_RS13560	0.42	+0.1
3,538,044	-		ABI39_RS13560	0.42	-0.3
3,538,211	-		ABI39_RS13560	0.69	+0.1
3,538,211	-		ABI39_RS13560	0.69	-0.3
3,538,390	-				+0.0
3,538,586	-		ABI39_RS13565	0.30	+0.7
3,538,613	+		ABI39_RS13565	0.35	+0.3
3,538,698	+		ABI39_RS13565	0.49	+1.0
3,538,813	-		ABI39_RS13565	0.68	-0.4
3,538,845	+		ABI39_RS13565	0.73	-1.4
3,538,845	+		ABI39_RS13565	0.73	+0.4
3,538,845	+		ABI39_RS13565	0.73	+1.2
3,538,889	+		ABI39_RS13565	0.80	-1.4
3,538,925	-		ABI39_RS13565	0.86	+0.8
3,538,925	-		ABI39_RS13565	0.86	+0.7
3,539,003	+				+0.5
3,539,007	+				+0.0
3,539,175	+		ABI39_RS13570	0.14	+0.2
3,539,269	-		ABI39_RS13570	0.22	-0.2
3,539,406	+		ABI39_RS13570	0.34	+0.3
3,539,409	-		ABI39_RS13570	0.34	-0.8
3,539,409	-		ABI39_RS13570	0.34	+1.0
3,539,409	-		ABI39_RS13570	0.34	+0.3
3,539,740	+		ABI39_RS13570	0.63	-0.7
3,539,741	-		ABI39_RS13570	0.63	-0.3
3,539,911	-		ABI39_RS13570	0.78	+0.5
3,540,067	-				+0.5
3,540,147	+				-0.4
3,540,147	+				-0.8
3,540,303	+		ABI39_RS13575	0.19	+1.3
3,540,304	-		ABI39_RS13575	0.19	+0.3
3,540,370	+		ABI39_RS13575	0.28	+0.6
3,540,623	+		ABI39_RS13575	0.61	+0.9
3,540,709	+		ABI39_RS13575	0.72	+0.5
3,540,709	+		ABI39_RS13575	0.72	-0.2
3,540,914	-				+0.1
3,540,932	-				-0.4
3,540,933	+				+0.3
3,540,934	-				-0.1
3,540,934	-				-0.8
3,540,934	-				-0.3
3,541,006	+		ABI39_RS13580	0.14	-1.9
3,541,006	+		ABI39_RS13580	0.14	+0.3
3,541,006	+		ABI39_RS13580	0.14	-0.8
3,541,051	-		ABI39_RS13580	0.22	+0.3
3,541,085	-		ABI39_RS13580	0.28	-0.3
3,541,104	-		ABI39_RS13580	0.31	+0.2
3,541,104	-		ABI39_RS13580	0.31	-0.2
3,541,105	+		ABI39_RS13580	0.32	-0.6
3,541,107	+		ABI39_RS13580	0.32	-0.5