Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20355

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
5,020,291	-				+0.4
5,020,335	+				+0.2
5,020,468	-				-0.3
5,020,468	-				+0.1
5,020,502	-		ABI39_RS20345	0.16	-0.1
5,020,510	-		ABI39_RS20345	0.18	-0.2
5,020,510	-		ABI39_RS20345	0.18	-0.6
5,020,510	-		ABI39_RS20345	0.18	-0.7
5,020,513	+		ABI39_RS20345	0.19	-1.1
5,020,516	+		ABI39_RS20345	0.20	-0.3
5,020,537	-		ABI39_RS20345	0.26	+1.4
5,020,666	+		ABI39_RS20345	0.60	+1.2
5,020,748	+		ABI39_RS20345	0.82	-0.5
5,020,750	+		ABI39_RS20345	0.82	+1.2
5,020,752	+		ABI39_RS20345	0.83	+0.0
5,020,753	-		ABI39_RS20345	0.83	+0.0
5,020,755	+		ABI39_RS20345	0.84	+0.5
5,020,755	+		ABI39_RS20345	0.84	+0.3
5,020,812	+				+0.8
5,020,816	+				-0.9
5,020,960	-		ABI39_RS20350	0.51	+0.2
5,021,018	+		ABI39_RS20350	0.71	-0.1
5,021,070	+		ABI39_RS20350	0.89	+1.5
5,021,118	+				-0.6
5,021,295	+				-0.6
5,021,296	-				-3.5
5,021,296	-				-0.6
5,021,296	-				-0.9
5,021,452	-				-1.7
5,021,550	+		ABI39_RS20355	0.13	+0.1
5,021,550	+		ABI39_RS20355	0.13	-1.9
5,021,592	-		ABI39_RS20355	0.15	-1.9
5,021,703	-		ABI39_RS20355	0.19	-0.9
5,021,769	-		ABI39_RS20355	0.22	-0.7
5,021,771	-		ABI39_RS20355	0.22	-1.6
5,022,040	+		ABI39_RS20355	0.32	-3.3
5,022,064	+		ABI39_RS20355	0.33	-2.0
5,022,158	-		ABI39_RS20355	0.37	-1.7
5,022,163	+		ABI39_RS20355	0.37	+0.1
5,022,244	+		ABI39_RS20355	0.40	-1.6
5,022,245	-		ABI39_RS20355	0.40	-1.6
5,022,245	-		ABI39_RS20355	0.40	-1.2
5,022,245	-		ABI39_RS20355	0.40	-1.2
5,022,277	+		ABI39_RS20355	0.41	-1.1
5,022,278	-		ABI39_RS20355	0.41	-0.3
5,022,378	+		ABI39_RS20355	0.45	-1.0
5,022,512	+		ABI39_RS20355	0.51	-2.3
5,022,671	+		ABI39_RS20355	0.57	-1.6
5,022,672	-		ABI39_RS20355	0.57	-1.6
5,022,710	+		ABI39_RS20355	0.58	-1.7
5,022,775	+		ABI39_RS20355	0.61	-0.1
5,022,782	-		ABI39_RS20355	0.61	-0.8
5,022,841	+		ABI39_RS20355	0.63	-2.3
5,022,842	-		ABI39_RS20355	0.63	-1.6
5,022,843	+		ABI39_RS20355	0.63	-0.2
5,022,960	+		ABI39_RS20355	0.68	-1.0
5,022,997	+		ABI39_RS20355	0.69	-0.8
5,023,273	-		ABI39_RS20355	0.80	-0.7
5,023,347	+		ABI39_RS20355	0.83	-1.2
5,023,372	+		ABI39_RS20355	0.84	+1.0
5,023,381	+		ABI39_RS20355	0.84	-2.1
5,023,382	-		ABI39_RS20355	0.84	-1.7
5,023,529	-				-0.9
5,023,549	-				-1.1
5,023,549	-				-1.1
5,023,602	+				-1.9
5,023,602	+				-1.6
5,023,663	-				-1.5
5,023,802	+				-1.1
5,023,855	-				-0.4
5,023,920	-				-2.3
5,023,932	-				-0.5
5,024,144	+				-0.2
5,024,256	-				+0.6
5,024,284	+		ABI39_RS20360	0.14	-0.8
5,024,289	-		ABI39_RS20360	0.15	-0.2
5,024,291	-		ABI39_RS20360	0.15	+0.5
5,024,436	-		ABI39_RS20360	0.36	+0.0
5,024,494	+		ABI39_RS20360	0.44	-0.5
5,024,679	+		ABI39_RS20360	0.70	-1.3
5,024,680	-		ABI39_RS20360	0.70	+0.6
5,024,682	-		ABI39_RS20360	0.71	-0.7