Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS16910

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
4,287,415	+		ABI39_RS16905	0.19	-3.6
4,287,419	-		ABI39_RS16905	0.19	-3.2
4,287,551	-		ABI39_RS16905	0.32	-2.5
4,287,551	-		ABI39_RS16905	0.32	-3.6
4,287,582	+		ABI39_RS16905	0.34	-2.4
4,287,583	-		ABI39_RS16905	0.35	+0.7
4,287,584	+		ABI39_RS16905	0.35	-4.2
4,287,603	+		ABI39_RS16905	0.36	-3.8
4,287,645	-		ABI39_RS16905	0.40	-0.9
4,287,657	+		ABI39_RS16905	0.41	-3.9
4,287,755	+		ABI39_RS16905	0.51	-3.7
4,287,756	-		ABI39_RS16905	0.51	-3.2
4,287,761	+		ABI39_RS16905	0.51	-2.7
4,287,765	+		ABI39_RS16905	0.52	-3.8
4,287,766	-		ABI39_RS16905	0.52	-2.6
4,287,857	+		ABI39_RS16905	0.60	-2.4
4,287,871	-		ABI39_RS16905	0.61	-2.0
4,288,017	+		ABI39_RS16905	0.75	-3.6
4,288,034	+		ABI39_RS16905	0.77	-4.3
4,288,114	-		ABI39_RS16905	0.84	-2.5
4,288,161	-		ABI39_RS16905	0.89	-0.9
4,288,189	+				-2.9
4,288,322	-				-2.6
4,288,356	+				+0.6
4,288,379	+				-0.7
4,288,405	-				-2.8
4,288,482	+				-3.0
4,288,483	-		ABI39_RS16910	0.10	-2.8
4,288,515	+		ABI39_RS16910	0.13	-4.0
4,288,562	-		ABI39_RS16910	0.19	-1.2
4,288,579	-		ABI39_RS16910	0.20	-0.5
4,288,668	+		ABI39_RS16910	0.30	-2.3
4,288,681	+		ABI39_RS16910	0.31	-2.4
4,288,837	+		ABI39_RS16910	0.48	-2.5
4,288,861	+		ABI39_RS16910	0.51	-3.0
4,288,896	+		ABI39_RS16910	0.55	-4.0
4,288,955	-		ABI39_RS16910	0.61	-0.5
4,288,959	+		ABI39_RS16910	0.62	-2.3
4,289,009	+		ABI39_RS16910	0.67	-1.5
4,289,054	-		ABI39_RS16910	0.72	-2.3
4,289,124	-		ABI39_RS16910	0.80	-1.4
4,289,184	-		ABI39_RS16910	0.86	-3.3
4,289,231	-				-3.0
4,289,355	-				+0.3
4,289,359	+				-0.7
4,289,405	-				+0.7
4,289,417	-				-0.6
4,289,549	+		ABI39_RS16915	0.11	-0.9
4,289,549	+		ABI39_RS16915	0.11	+0.2
4,289,610	+		ABI39_RS16915	0.15	+0.9
4,289,611	-		ABI39_RS16915	0.16	+0.3
4,289,685	-		ABI39_RS16915	0.21	-0.8
4,289,691	+		ABI39_RS16915	0.22	-0.2
4,289,691	+		ABI39_RS16915	0.22	+0.1
4,289,847	+		ABI39_RS16915	0.34	-0.0
4,289,847	+		ABI39_RS16915	0.34	+0.6
4,289,907	-		ABI39_RS16915	0.39	+0.0
4,289,993	-		ABI39_RS16915	0.46	+0.3
4,290,037	+		ABI39_RS16915	0.50	-0.5
4,290,078	+		ABI39_RS16915	0.53	-0.2
4,290,079	-		ABI39_RS16915	0.53	+0.2
4,290,128	+		ABI39_RS16915	0.57	+0.1
4,290,172	+		ABI39_RS16915	0.60	-0.6
4,290,182	+		ABI39_RS16915	0.61	+1.3
4,290,183	-		ABI39_RS16915	0.61	+0.9
4,290,195	+		ABI39_RS16915	0.62	+0.1
4,290,258	+		ABI39_RS16915	0.67	+0.7
4,290,259	-		ABI39_RS16915	0.67	+0.2
4,290,281	+		ABI39_RS16915	0.69	+0.9