Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS15670

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
4,053,637	+				+0.5
4,053,638	-				-0.8
4,053,644	-				-1.7
4,053,681	+				-2.2
4,053,682	-				-1.6
4,053,951	+		ABI39_RS15665	0.34	-2.8
4,053,951	+		ABI39_RS15665	0.34	-0.4
4,053,951	+		ABI39_RS15665	0.34	-1.8
4,053,953	+		ABI39_RS15665	0.34	-2.0
4,053,955	+		ABI39_RS15665	0.34	-1.1
4,053,999	-		ABI39_RS15665	0.38	+0.9
4,054,218	+		ABI39_RS15665	0.60	-3.9
4,054,426	+		ABI39_RS15665	0.81	-0.7
4,054,784	+		ABI39_RS15670	0.20	-2.0
4,054,797	+		ABI39_RS15670	0.21	-1.5
4,054,798	-		ABI39_RS15670	0.21	-1.7
4,054,802	-		ABI39_RS15670	0.21	-0.8
4,054,905	-		ABI39_RS15670	0.32	-1.9
4,054,991	+		ABI39_RS15670	0.42	-1.0
4,055,022	-		ABI39_RS15670	0.45	-1.0
4,055,024	-		ABI39_RS15670	0.45	-1.7
4,055,024	-		ABI39_RS15670	0.45	-1.3
4,055,066	+		ABI39_RS15670	0.50	-1.7
4,055,085	+		ABI39_RS15670	0.52	-0.9
4,055,119	-		ABI39_RS15670	0.55	-1.5
4,055,155	-		ABI39_RS15670	0.59	-0.1
4,055,170	-		ABI39_RS15670	0.61	-1.2
4,055,218	-		ABI39_RS15670	0.66	-2.0
4,055,291	+		ABI39_RS15670	0.74	-1.3
4,055,398	+		ABI39_RS15670	0.85	-2.0
4,055,398	+		ABI39_RS15670	0.85	-0.9
4,055,399	-		ABI39_RS15670	0.85	-0.8
4,055,456	+				-2.6
4,055,520	+				+0.3
4,055,546	+				-0.1
4,055,792	-				-0.3
4,055,863	-				-1.1
4,055,966	-		ABI39_RS15680	0.14	+0.5
4,055,966	-		ABI39_RS15680	0.14	-0.3
4,056,162	+		ABI39_RS15680	0.30	-0.4
4,056,163	-		ABI39_RS15680	0.30	-0.3
4,056,307	+		ABI39_RS15680	0.42	-0.3
4,056,327	+		ABI39_RS15680	0.43	-0.7
4,056,366	-		ABI39_RS15680	0.47	-0.7
4,056,374	+		ABI39_RS15680	0.47	-0.3
4,056,374	+		ABI39_RS15680	0.47	-0.7
4,056,375	-		ABI39_RS15680	0.47	-0.0
4,056,377	-		ABI39_RS15680	0.47	+0.1
4,056,488	-		ABI39_RS15680	0.57	-1.2
4,056,497	+		ABI39_RS15680	0.57	+0.5
4,056,497	+		ABI39_RS15680	0.57	+0.2
4,056,531	+		ABI39_RS15680	0.60	-0.5
4,056,532	-		ABI39_RS15680	0.60	-1.2