Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS15490

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
4,002,912	+		ABI39_RS15480	0.65	-0.9
4,002,917	-		ABI39_RS15480	0.65	-1.4
4,003,049	-		ABI39_RS15480	0.74	-2.9
4,003,049	-		ABI39_RS15480	0.74	-0.3
4,003,169	+		ABI39_RS15480	0.83	-2.5
4,003,172	+		ABI39_RS15480	0.83	-2.3
4,003,174	+		ABI39_RS15480	0.83	-0.7
4,003,388	-				-2.4
4,003,590	+		ABI39_RS15485	0.18	-0.5
4,003,683	+		ABI39_RS15485	0.40	+0.6
4,003,687	-		ABI39_RS15485	0.41	+0.0
4,003,710	-		ABI39_RS15485	0.47	-0.1
4,003,713	+		ABI39_RS15485	0.47	-0.3
4,003,713	+		ABI39_RS15485	0.47	-0.8
4,003,716	-		ABI39_RS15485	0.48	+0.2
4,003,716	-		ABI39_RS15485	0.48	+0.5
4,004,041	-		ABI39_RS15490	0.20	-1.3
4,004,061	+		ABI39_RS15490	0.23	-1.8
4,004,072	+		ABI39_RS15490	0.24	-1.9
4,004,072	+		ABI39_RS15490	0.24	-0.5
4,004,072	+		ABI39_RS15490	0.24	-1.3
4,004,122	+		ABI39_RS15490	0.31	-0.5
4,004,127	+		ABI39_RS15490	0.32	-0.4
4,004,128	-		ABI39_RS15490	0.32	-2.3
4,004,150	-		ABI39_RS15490	0.35	-1.4
4,004,290	-		ABI39_RS15490	0.54	-0.5
4,004,441	+		ABI39_RS15490	0.75	-1.8
4,004,442	-		ABI39_RS15490	0.75	-1.5
4,004,443	+		ABI39_RS15490	0.75	-0.2
4,004,465	-		ABI39_RS15490	0.78	-0.3
4,004,526	+		ABI39_RS15490	0.87	-2.8
4,004,526	+		ABI39_RS15490	0.87	-0.8
4,004,527	-		ABI39_RS15490	0.87	+0.9
4,004,528	+		ABI39_RS15490	0.87	-1.0
4,004,528	+		ABI39_RS15490	0.87	-1.0
4,004,532	-		ABI39_RS15490	0.87	-1.3
4,004,741	-				-1.8
4,004,762	-				-2.0
4,004,764	+				-1.6
4,004,823	-				+0.5
4,004,889	+		ABI39_RS15495	0.14	-2.3
4,004,891	+		ABI39_RS15495	0.14	+0.9
4,004,956	-		ABI39_RS15495	0.20	+0.9
4,005,005	+		ABI39_RS15495	0.24	+0.2
4,005,005	+		ABI39_RS15495	0.24	-1.5
4,005,168	-		ABI39_RS15495	0.38	-2.0
4,005,173	-		ABI39_RS15495	0.39	-1.4
4,005,176	+		ABI39_RS15495	0.39	-0.0
4,005,177	-		ABI39_RS15495	0.39	-1.3
4,005,259	-		ABI39_RS15495	0.46	-1.3
4,005,278	-		ABI39_RS15495	0.48	-1.1
4,005,495	+		ABI39_RS15495	0.67	-0.7
4,005,495	+		ABI39_RS15495	0.67	-1.4
4,005,503	-		ABI39_RS15495	0.67	-0.8