Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS13465

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
3,498,459	+		ABI39_RS13460	0.24	-0.5
3,498,473	+		ABI39_RS13460	0.25	-0.1
3,498,473	+		ABI39_RS13460	0.25	+2.0
3,498,473	+		ABI39_RS13460	0.25	+0.4
3,498,474	-		ABI39_RS13460	0.25	-0.8
3,498,478	-		ABI39_RS13460	0.26	-0.3
3,498,530	-		ABI39_RS13460	0.30	+2.9
3,498,650	-		ABI39_RS13460	0.41	-0.5
3,498,834	-		ABI39_RS13460	0.58	+0.6
3,499,371	-				-0.6
3,499,454	-		ABI39_RS13465	0.23	-1.1
3,499,454	-		ABI39_RS13465	0.23	-2.1
3,499,842	+				+0.5
3,499,850	-				+0.6
3,499,875	-				-0.4
3,499,920	-				-1.7
3,500,028	-				+0.3
3,500,507	-		ABI39_RS13470	0.29	+0.7
3,500,551	+		ABI39_RS13470	0.34	+1.1
3,500,616	+		ABI39_RS13470	0.41	-0.9
3,500,735	+		ABI39_RS13470	0.54	+0.0
3,500,856	+		ABI39_RS13470	0.67	-0.6
3,500,856	+		ABI39_RS13470	0.67	-0.9