Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS13185

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
3,432,084	-				-0.2
3,432,254	+		ABI39_RS13180	0.21	-0.7
3,432,290	+		ABI39_RS13180	0.24	-0.7
3,432,290	+		ABI39_RS13180	0.24	+1.0
3,432,291	-		ABI39_RS13180	0.24	-0.7
3,432,411	+		ABI39_RS13180	0.36	+1.0
3,432,412	-		ABI39_RS13180	0.36	+1.0
3,432,423	+		ABI39_RS13180	0.37	+2.6
3,432,496	+		ABI39_RS13180	0.44	-1.0
3,432,513	-		ABI39_RS13180	0.46	+0.0
3,432,519	+		ABI39_RS13180	0.47	+1.0
3,432,520	-		ABI39_RS13180	0.47	+1.0
3,432,637	-		ABI39_RS13180	0.58	-1.0
3,432,711	+		ABI39_RS13180	0.65	+0.0
3,432,711	+		ABI39_RS13180	0.65	-0.9
3,432,894	+		ABI39_RS13180	0.83	+1.0
3,432,911	+		ABI39_RS13180	0.85	+0.3
3,433,008	+				+0.6
3,433,056	-				+0.3
3,433,099	+				+1.6
3,433,177	+		ABI39_RS13185	0.18	-0.6
3,433,183	+		ABI39_RS13185	0.19	-0.4
3,433,206	+		ABI39_RS13185	0.23	-0.9
3,433,691	-				-0.8
3,433,728	-		ABI39_RS13190	0.11	-0.4
3,433,810	+		ABI39_RS13190	0.23	+0.3
3,433,872	-		ABI39_RS13190	0.31	-0.4
3,433,902	+		ABI39_RS13190	0.36	-0.2
3,433,960	+		ABI39_RS13190	0.44	+0.0
3,434,020	-		ABI39_RS13190	0.53	-2.4
3,434,024	-		ABI39_RS13190	0.53	+0.8
3,434,051	+		ABI39_RS13190	0.57	+0.6
3,434,057	-		ABI39_RS13190	0.58	-1.6
3,434,057	-		ABI39_RS13190	0.58	-0.6
3,434,161	-		ABI39_RS13190	0.73	-1.0
3,434,198	-		ABI39_RS13190	0.78	-0.3
3,434,199	+		ABI39_RS13190	0.78	+0.6
3,434,203	+		ABI39_RS13190	0.79	-1.2
3,434,204	-		ABI39_RS13190	0.79	-0.6
3,434,204	-		ABI39_RS13190	0.79	-1.4
3,434,288	+				+1.0
3,434,298	+				+0.3
3,434,299	-				-1.8
3,434,325	+				+0.6
3,434,326	-				-0.2
3,434,326	-				-0.9
3,434,328	-				-0.1
3,434,394	+		ABI39_RS13195	0.17	-1.6
3,434,404	-		ABI39_RS13195	0.19	+0.4
3,434,424	+		ABI39_RS13195	0.23	+0.0
3,434,511	+		ABI39_RS13195	0.38	+0.0
3,434,519	+		ABI39_RS13195	0.40	+0.0
3,434,540	-		ABI39_RS13195	0.44	-0.4
3,434,560	+		ABI39_RS13195	0.47	+0.6
3,434,613	-		ABI39_RS13195	0.57	-0.4
3,434,627	-		ABI39_RS13195	0.60	-0.0
3,434,627	-		ABI39_RS13195	0.60	+0.9