Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS12755

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
3,338,563	-				+0.6
3,338,600	-				-0.3
3,338,613	-				+0.7
3,338,630	+				-0.6
3,338,636	-				-0.8
3,338,636	-				+0.9
3,338,684	+				-0.1
3,338,684	+				+0.1
3,338,685	-				-0.5
3,338,685	-				+0.2
3,338,686	+				+0.2
3,338,686	+				-0.4
3,338,690	+				-0.9
3,338,691	-				-2.4
3,338,692	+				-1.0
3,338,754	-				-0.4
3,338,770	+				+0.6
3,338,811	-				+2.1
3,338,819	-				+0.0
3,338,830	-				+0.1
3,338,832	-				+0.0
3,338,832	-				-0.6
3,338,832	-				-0.2
3,338,891	-				-0.0
3,338,915	-				-0.6
3,338,930	+				-0.5
3,338,999	+				+1.8
3,338,999	+				+0.3
3,339,000	-				-0.2
3,339,019	+				+0.6
3,339,020	-				+2.6
3,339,086	-				-0.1
3,339,098	-				+1.5
3,339,098	-				-0.3
3,339,129	-				-0.3
3,339,130	+				+0.4
3,339,248	-				-1.4
3,339,298	+				-0.5
3,339,316	-				-0.7
3,339,742	+		ABI39_RS12755	0.20	+0.3
3,340,067	-		ABI39_RS12755	0.35	+0.3
3,340,069	-		ABI39_RS12755	0.35	+1.6
3,340,069	-		ABI39_RS12755	0.35	+0.3
3,340,072	+		ABI39_RS12755	0.35	+1.6
3,340,181	-		ABI39_RS12755	0.41	+0.1
3,340,417	-		ABI39_RS12755	0.52	-0.2
3,340,441	-		ABI39_RS12755	0.53	+1.1
3,340,451	+		ABI39_RS12755	0.53	+0.6
3,340,502	+		ABI39_RS12755	0.56	+1.1
3,340,502	+		ABI39_RS12755	0.56	+0.6
3,340,750	+		ABI39_RS12755	0.67	+2.6
3,340,753	+		ABI39_RS12755	0.67	+1.1
3,340,921	+		ABI39_RS12755	0.75	+1.3
3,340,951	-		ABI39_RS12755	0.77	-0.5
3,340,959	-		ABI39_RS12755	0.77	-0.2
3,341,176	-		ABI39_RS12755	0.87	+0.1
3,341,538	-				+0.6
3,341,580	-				-0.7
3,341,701	-		ABI39_RS12760	0.12	-0.1
3,341,805	+		ABI39_RS12760	0.20	-2.3
3,341,815	+		ABI39_RS12760	0.21	+1.4
3,341,904	-		ABI39_RS12760	0.28	-0.4
3,341,906	+		ABI39_RS12760	0.28	+0.4
3,341,912	+		ABI39_RS12760	0.28	+0.4
3,342,041	-		ABI39_RS12760	0.39	+0.3
3,342,041	-		ABI39_RS12760	0.39	+1.0
3,342,042	+		ABI39_RS12760	0.39	+0.8
3,342,047	+		ABI39_RS12760	0.39	-0.3
3,342,047	+		ABI39_RS12760	0.39	+1.1
3,342,052	+		ABI39_RS12760	0.39	-0.1
3,342,117	-		ABI39_RS12760	0.45	+0.2
3,342,172	+		ABI39_RS12760	0.49	-0.2
3,342,264	-		ABI39_RS12760	0.56	+0.3
3,342,265	+		ABI39_RS12760	0.56	+1.8
3,342,288	-		ABI39_RS12760	0.58	+0.2
3,342,357	-		ABI39_RS12760	0.64	-0.4
3,342,358	+		ABI39_RS12760	0.64	-2.2
3,342,406	-		ABI39_RS12760	0.68	-0.8
3,342,406	-		ABI39_RS12760	0.68	+0.2