Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS09685

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
2,601,779	-				+0.4
2,601,779	-				+0.5
2,601,780	+				-0.1
2,601,801	-				-0.8
2,601,806	+				+0.5
2,601,807	-				+0.2
2,601,900	+		ABI39_RS09680	0.13	+0.1
2,601,979	-		ABI39_RS09680	0.23	+0.9
2,601,979	-		ABI39_RS09680	0.23	+0.4
2,601,995	+		ABI39_RS09680	0.25	+0.2
2,601,995	+		ABI39_RS09680	0.25	-1.4
2,601,997	+		ABI39_RS09680	0.25	-0.7
2,601,997	+		ABI39_RS09680	0.25	-1.2
2,601,998	-		ABI39_RS09680	0.25	-0.9
2,601,998	-		ABI39_RS09680	0.25	-0.9
2,602,005	-		ABI39_RS09680	0.26	+0.6
2,602,011	+		ABI39_RS09680	0.27	+0.1
2,602,114	-		ABI39_RS09680	0.39	+1.0
2,602,114	-		ABI39_RS09680	0.39	+0.1
2,602,114	-		ABI39_RS09680	0.39	-0.2
2,602,248	-		ABI39_RS09680	0.56	+0.3
2,602,414	-		ABI39_RS09680	0.76	+0.8
2,602,623	+				-0.3
2,602,740	-		ABI39_RS09685	0.19	+0.1
2,602,852	+		ABI39_RS09685	0.35	-0.8
2,603,028	+		ABI39_RS09685	0.61	-1.1
2,603,165	-		ABI39_RS09685	0.80	-1.6
2,603,408	+				-1.1
2,603,454	+				+1.7
2,603,455	-				-0.1
2,603,527	-				-0.2
2,603,680	+		ABI39_RS09690	0.20	-0.1
2,603,853	-		ABI39_RS09690	0.32	-0.5
2,603,856	+		ABI39_RS09690	0.32	-0.7
2,603,857	-		ABI39_RS09690	0.32	+0.2
2,603,976	+		ABI39_RS09690	0.41	-0.4
2,603,976	+		ABI39_RS09690	0.41	+1.1
2,603,977	-		ABI39_RS09690	0.41	-0.3
2,604,154	+		ABI39_RS09690	0.53	-1.2
2,604,164	+		ABI39_RS09690	0.54	-0.4
2,604,228	-		ABI39_RS09690	0.59	+1.8