Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS06045 and ABI39_RS06050 overlap by 25 nucleotides ABI39_RS06050 and ABI39_RS06055 are separated by 18 nucleotides ABI39_RS06055 and ABI39_RS06060 are separated by 15 nucleotides
ABI39_RS06045: ABI39_RS06045 - DedA family protein, at 1,681,440 to 1,681,907
_RS06045
ABI39_RS06050: ABI39_RS06050 - hypothetical protein, at 1,681,883 to 1,682,818
_RS06050
ABI39_RS06055: ABI39_RS06055 - phosphoribosylamine--glycine ligase, at 1,682,837 to 1,684,105
_RS06055
ABI39_RS06060: ABI39_RS06060 - S9 family peptidase, at 1,684,121 to 1,686,334
_RS06060
Position (kb) 1682
1683
1684
1685 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1681.844 kb on + strand, within ABI39_RS06045 at 1681.914 kb on + strand at 1681.922 kb on + strand at 1681.922 kb on + strand at 1681.934 kb on + strand at 1681.946 kb on - strand at 1681.988 kb on - strand, within ABI39_RS06050 at 1682.295 kb on + strand, within ABI39_RS06050 at 1682.296 kb on - strand, within ABI39_RS06050 at 1682.397 kb on + strand, within ABI39_RS06050 at 1682.421 kb on - strand, within ABI39_RS06050 at 1682.510 kb on + strand, within ABI39_RS06050 at 1682.597 kb on + strand, within ABI39_RS06050 at 1682.597 kb on + strand, within ABI39_RS06050 at 1682.598 kb on - strand, within ABI39_RS06050 at 1682.599 kb on + strand, within ABI39_RS06050 at 1682.703 kb on - strand, within ABI39_RS06050 at 1682.747 kb on + strand at 1682.748 kb on - strand at 1682.827 kb on - strand at 1683.014 kb on + strand, within ABI39_RS06055 at 1683.104 kb on + strand, within ABI39_RS06055 at 1683.234 kb on - strand, within ABI39_RS06055 at 1683.241 kb on - strand, within ABI39_RS06055 at 1683.267 kb on - strand, within ABI39_RS06055 at 1683.276 kb on - strand, within ABI39_RS06055 at 1683.290 kb on - strand, within ABI39_RS06055 at 1683.399 kb on - strand, within ABI39_RS06055 at 1683.399 kb on - strand, within ABI39_RS06055 at 1683.666 kb on - strand, within ABI39_RS06055 at 1683.913 kb on + strand, within ABI39_RS06055 at 1683.953 kb on - strand, within ABI39_RS06055 at 1683.991 kb on + strand at 1683.992 kb on - strand at 1684.021 kb on - strand at 1684.162 kb on - strand at 1684.190 kb on - strand at 1684.193 kb on - strand at 1684.408 kb on - strand, within ABI39_RS06060 at 1684.477 kb on - strand, within ABI39_RS06060 at 1684.704 kb on + strand, within ABI39_RS06060 at 1684.729 kb on - strand, within ABI39_RS06060 at 1684.776 kb on + strand, within ABI39_RS06060 at 1684.836 kb on + strand, within ABI39_RS06060 at 1684.837 kb on - strand, within ABI39_RS06060 at 1684.839 kb on - strand, within ABI39_RS06060 at 1684.839 kb on - strand, within ABI39_RS06060 at 1684.892 kb on - strand, within ABI39_RS06060 at 1684.892 kb on - strand, within ABI39_RS06060 at 1684.993 kb on + strand, within ABI39_RS06060 at 1685.010 kb on + strand, within ABI39_RS06060
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/ml (C) remove 1,681,844 + ABI39_RS06045 0.86 -1.3 1,681,914 + -0.3 1,681,922 + -0.6 1,681,922 + -2.6 1,681,934 + -0.9 1,681,946 - +0.3 1,681,988 - ABI39_RS06050 0.11 +0.3 1,682,295 + ABI39_RS06050 0.44 -0.3 1,682,296 - ABI39_RS06050 0.44 +1.2 1,682,397 + ABI39_RS06050 0.55 +0.1 1,682,421 - ABI39_RS06050 0.57 +0.3 1,682,510 + ABI39_RS06050 0.67 +0.5 1,682,597 + ABI39_RS06050 0.76 -0.2 1,682,597 + ABI39_RS06050 0.76 -1.7 1,682,598 - ABI39_RS06050 0.76 -0.2 1,682,599 + ABI39_RS06050 0.76 +0.6 1,682,703 - ABI39_RS06050 0.88 -2.1 1,682,747 + +1.6 1,682,748 - +1.6 1,682,827 - -1.2 1,683,014 + ABI39_RS06055 0.14 -0.4 1,683,104 + ABI39_RS06055 0.21 +0.6 1,683,234 - ABI39_RS06055 0.31 -1.9 1,683,241 - ABI39_RS06055 0.32 -3.4 1,683,267 - ABI39_RS06055 0.34 -4.3 1,683,276 - ABI39_RS06055 0.35 -3.0 1,683,290 - ABI39_RS06055 0.36 -1.9 1,683,399 - ABI39_RS06055 0.44 -2.3 1,683,399 - ABI39_RS06055 0.44 -2.8 1,683,666 - ABI39_RS06055 0.65 -3.2 1,683,913 + ABI39_RS06055 0.85 -0.8 1,683,953 - ABI39_RS06055 0.88 -2.9 1,683,991 + +0.1 1,683,992 - -2.3 1,684,021 - -2.5 1,684,162 - -0.3 1,684,190 - -0.3 1,684,193 - +1.3 1,684,408 - ABI39_RS06060 0.13 +0.0 1,684,477 - ABI39_RS06060 0.16 +0.8 1,684,704 + ABI39_RS06060 0.26 -1.5 1,684,729 - ABI39_RS06060 0.27 +0.5 1,684,776 + ABI39_RS06060 0.30 -1.5 1,684,836 + ABI39_RS06060 0.32 -1.2 1,684,837 - ABI39_RS06060 0.32 -0.2 1,684,839 - ABI39_RS06060 0.32 -0.2 1,684,839 - ABI39_RS06060 0.32 +0.3 1,684,892 - ABI39_RS06060 0.35 -0.2 1,684,892 - ABI39_RS06060 0.35 -0.3 1,684,993 + ABI39_RS06060 0.39 +1.6 1,685,010 + ABI39_RS06060 0.40 +1.9
Or see this region's nucleotide sequence