Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS03315 and ABI39_RS03320 are separated by 17 nucleotides ABI39_RS03320 and ABI39_RS03325 are separated by 28 nucleotides ABI39_RS03325 and ABI39_RS03330 are separated by 196 nucleotides
ABI39_RS03315: ABI39_RS03315 - GH92 family glycosyl hydrolase, at 959,177 to 961,459
_RS03315
ABI39_RS03320: ABI39_RS03320 - FecR domain-containing protein, at 961,477 to 962,469
_RS03320
ABI39_RS03325: ABI39_RS03325 - RNA polymerase sigma-70 factor, at 962,498 to 963,073
_RS03325
ABI39_RS03330: ABI39_RS03330 - GH92 family glycosyl hydrolase, at 963,270 to 965,492
_RS03330
Position (kb) 961
962
963 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 960.506 kb on - strand, within ABI39_RS03315 at 960.644 kb on - strand, within ABI39_RS03315 at 960.783 kb on + strand, within ABI39_RS03315 at 960.783 kb on + strand, within ABI39_RS03315 at 960.922 kb on + strand, within ABI39_RS03315 at 960.970 kb on + strand, within ABI39_RS03315 at 960.972 kb on + strand, within ABI39_RS03315 at 961.223 kb on - strand, within ABI39_RS03315 at 961.371 kb on + strand at 961.459 kb on + strand at 961.498 kb on - strand at 961.502 kb on - strand at 961.510 kb on - strand at 961.517 kb on - strand at 961.524 kb on + strand at 961.539 kb on + strand at 961.540 kb on - strand at 961.540 kb on - strand at 961.575 kb on + strand at 961.576 kb on - strand at 961.576 kb on - strand at 961.606 kb on - strand, within ABI39_RS03320 at 961.606 kb on - strand, within ABI39_RS03320 at 961.611 kb on + strand, within ABI39_RS03320 at 961.611 kb on + strand, within ABI39_RS03320 at 961.827 kb on + strand, within ABI39_RS03320 at 961.834 kb on + strand, within ABI39_RS03320 at 961.834 kb on + strand, within ABI39_RS03320 at 962.036 kb on + strand, within ABI39_RS03320 at 962.065 kb on + strand, within ABI39_RS03320 at 962.066 kb on - strand, within ABI39_RS03320 at 962.193 kb on + strand, within ABI39_RS03320 at 962.220 kb on + strand, within ABI39_RS03320 at 962.220 kb on + strand, within ABI39_RS03320 at 962.323 kb on - strand, within ABI39_RS03320 at 962.485 kb on + strand at 962.487 kb on + strand at 962.516 kb on + strand at 962.534 kb on + strand at 962.534 kb on + strand at 962.591 kb on - strand, within ABI39_RS03325 at 962.592 kb on + strand, within ABI39_RS03325 at 962.592 kb on + strand, within ABI39_RS03325 at 962.596 kb on + strand, within ABI39_RS03325 at 962.596 kb on + strand, within ABI39_RS03325 at 962.597 kb on - strand, within ABI39_RS03325 at 962.597 kb on - strand, within ABI39_RS03325 at 962.597 kb on - strand, within ABI39_RS03325 at 962.690 kb on - strand, within ABI39_RS03325 at 962.865 kb on - strand, within ABI39_RS03325 at 962.877 kb on + strand, within ABI39_RS03325 at 962.916 kb on - strand, within ABI39_RS03325 at 963.049 kb on - strand at 963.049 kb on - strand at 963.049 kb on - strand at 963.076 kb on + strand at 963.078 kb on + strand at 963.080 kb on + strand at 963.094 kb on - strand at 963.094 kb on - strand at 963.167 kb on - strand at 963.271 kb on + strand at 963.276 kb on - strand at 963.276 kb on - strand at 963.276 kb on - strand at 963.284 kb on + strand at 963.352 kb on + strand at 963.352 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/ml (C) remove 960,506 - ABI39_RS03315 0.58 +0.9 960,644 - ABI39_RS03315 0.64 -0.8 960,783 + ABI39_RS03315 0.70 -1.9 960,783 + ABI39_RS03315 0.70 -1.8 960,922 + ABI39_RS03315 0.76 +0.3 960,970 + ABI39_RS03315 0.79 +0.4 960,972 + ABI39_RS03315 0.79 +0.0 961,223 - ABI39_RS03315 0.90 +0.5 961,371 + +1.2 961,459 + -0.3 961,498 - +1.0 961,502 - -0.1 961,510 - -1.1 961,517 - -1.0 961,524 + -1.1 961,539 + -2.4 961,540 - -1.2 961,540 - -2.3 961,575 + -1.5 961,576 - -0.8 961,576 - -2.9 961,606 - ABI39_RS03320 0.13 -0.5 961,606 - ABI39_RS03320 0.13 -1.0 961,611 + ABI39_RS03320 0.13 -1.1 961,611 + ABI39_RS03320 0.13 -0.7 961,827 + ABI39_RS03320 0.35 -0.5 961,834 + ABI39_RS03320 0.36 -2.1 961,834 + ABI39_RS03320 0.36 -2.3 962,036 + ABI39_RS03320 0.56 -2.8 962,065 + ABI39_RS03320 0.59 -1.8 962,066 - ABI39_RS03320 0.59 -1.4 962,193 + ABI39_RS03320 0.72 -2.0 962,220 + ABI39_RS03320 0.75 -1.4 962,220 + ABI39_RS03320 0.75 -0.1 962,323 - ABI39_RS03320 0.85 -1.1 962,485 + -1.1 962,487 + -0.9 962,516 + -1.1 962,534 + -0.7 962,534 + -1.1 962,591 - ABI39_RS03325 0.16 -0.1 962,592 + ABI39_RS03325 0.16 -0.3 962,592 + ABI39_RS03325 0.16 -0.5 962,596 + ABI39_RS03325 0.17 -1.1 962,596 + ABI39_RS03325 0.17 -0.0 962,597 - ABI39_RS03325 0.17 -2.4 962,597 - ABI39_RS03325 0.17 -0.3 962,597 - ABI39_RS03325 0.17 -0.5 962,690 - ABI39_RS03325 0.33 -0.6 962,865 - ABI39_RS03325 0.64 +0.6 962,877 + ABI39_RS03325 0.66 +0.4 962,916 - ABI39_RS03325 0.73 +0.7 963,049 - +0.1 963,049 - -0.1 963,049 - -0.4 963,076 + -0.1 963,078 + -2.0 963,080 + +0.1 963,094 - -0.4 963,094 - -1.0 963,167 - -0.6 963,271 + -0.4 963,276 - +0.2 963,276 - +0.2 963,276 - -0.7 963,284 + +0.1 963,352 + +0.1 963,352 + -0.4
Or see this region's nucleotide sequence