Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS03000 and ABI39_RS03005 are separated by 85 nucleotides ABI39_RS03005 and ABI39_RS03010 are separated by 358 nucleotides ABI39_RS03010 and ABI39_RS03015 are separated by 100 nucleotides
ABI39_RS03000: ABI39_RS03000 - L-rhamnose/proton symporter RhaT, at 872,833 to 873,852
_RS03000
ABI39_RS03005: ABI39_RS03005 - rhamnulose-1-phosphate aldolase, at 873,938 to 874,747
_RS03005
ABI39_RS03010: ABI39_RS03010 - DUF4251 domain-containing protein, at 875,106 to 875,603
_RS03010
ABI39_RS03015: ABI39_RS03015 - right-handed parallel beta-helix repeat-containing protein, at 875,704 to 877,218
_RS03015
Position (kb) 873
874
875 Strain fitness (log2 ratio) -2
-1
0
1 at 872.955 kb on - strand, within ABI39_RS03000 at 872.978 kb on + strand, within ABI39_RS03000 at 873.066 kb on + strand, within ABI39_RS03000 at 873.068 kb on + strand, within ABI39_RS03000 at 873.071 kb on + strand, within ABI39_RS03000 at 873.138 kb on + strand, within ABI39_RS03000 at 873.138 kb on + strand, within ABI39_RS03000 at 873.243 kb on + strand, within ABI39_RS03000 at 873.244 kb on - strand, within ABI39_RS03000 at 873.543 kb on - strand, within ABI39_RS03000 at 873.543 kb on - strand, within ABI39_RS03000 at 873.705 kb on + strand, within ABI39_RS03000 at 873.741 kb on - strand, within ABI39_RS03000 at 873.752 kb on + strand at 873.786 kb on + strand at 873.833 kb on + strand at 873.876 kb on - strand at 873.985 kb on + strand at 874.008 kb on - strand at 874.070 kb on + strand, within ABI39_RS03005 at 874.177 kb on + strand, within ABI39_RS03005 at 874.322 kb on + strand, within ABI39_RS03005 at 874.554 kb on - strand, within ABI39_RS03005 at 874.560 kb on + strand, within ABI39_RS03005 at 874.605 kb on + strand, within ABI39_RS03005 at 874.635 kb on + strand, within ABI39_RS03005 at 874.755 kb on - strand at 874.909 kb on + strand at 875.030 kb on - strand at 875.090 kb on - strand at 875.103 kb on + strand at 875.106 kb on - strand at 875.106 kb on - strand at 875.318 kb on - strand, within ABI39_RS03010 at 875.364 kb on + strand, within ABI39_RS03010 at 875.534 kb on - strand, within ABI39_RS03010 at 875.649 kb on + strand at 875.706 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/ml (C) remove 872,955 - ABI39_RS03000 0.12 -0.3 872,978 + ABI39_RS03000 0.14 -0.1 873,066 + ABI39_RS03000 0.23 -0.6 873,068 + ABI39_RS03000 0.23 +0.5 873,071 + ABI39_RS03000 0.23 +0.8 873,138 + ABI39_RS03000 0.30 -1.0 873,138 + ABI39_RS03000 0.30 -0.3 873,243 + ABI39_RS03000 0.40 -1.2 873,244 - ABI39_RS03000 0.40 +0.5 873,543 - ABI39_RS03000 0.70 +1.3 873,543 - ABI39_RS03000 0.70 -0.3 873,705 + ABI39_RS03000 0.85 -0.0 873,741 - ABI39_RS03000 0.89 +0.2 873,752 + +0.0 873,786 + -0.1 873,833 + +0.2 873,876 - -0.9 873,985 + -1.7 874,008 - -1.2 874,070 + ABI39_RS03005 0.16 -1.1 874,177 + ABI39_RS03005 0.30 -1.8 874,322 + ABI39_RS03005 0.47 -0.8 874,554 - ABI39_RS03005 0.76 -2.0 874,560 + ABI39_RS03005 0.77 -0.4 874,605 + ABI39_RS03005 0.82 -2.0 874,635 + ABI39_RS03005 0.86 -1.7 874,755 - +0.3 874,909 + -0.4 875,030 - +0.1 875,090 - -0.4 875,103 + -0.3 875,106 - +0.3 875,106 - -0.2 875,318 - ABI39_RS03010 0.43 -0.9 875,364 + ABI39_RS03010 0.52 +0.1 875,534 - ABI39_RS03010 0.86 -1.2 875,649 + +1.3 875,706 - -1.3
Or see this region's nucleotide sequence