Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02965 and ABI39_RS02970 are separated by 13 nucleotides ABI39_RS02970 and ABI39_RS02975 are separated by 5 nucleotides ABI39_RS02975 and ABI39_RS02980 are separated by 107 nucleotides ABI39_RS02980 and ABI39_RS02985 are separated by 23 nucleotides
ABI39_RS02965: ABI39_RS02965 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 865,172 to 866,296
_RS02965
ABI39_RS02970: ABI39_RS02970 - N-acetyl-gamma-glutamyl-phosphate reductase, at 866,310 to 867,278
_RS02970
ABI39_RS02975: ABI39_RS02975 - argininosuccinate synthase, at 867,284 to 868,492
_RS02975
ABI39_RS02980: ABI39_RS02980 - N-acetyltransferase, at 868,600 to 869,157
_RS02980
ABI39_RS02985: ABI39_RS02985 - arginine repressor, at 869,181 to 869,657
_RS02985
Position (kb) 867
868
869 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 866.375 kb on + strand at 866.539 kb on + strand, within ABI39_RS02970 at 866.542 kb on + strand, within ABI39_RS02970 at 866.601 kb on - strand, within ABI39_RS02970 at 866.646 kb on + strand, within ABI39_RS02970 at 866.726 kb on - strand, within ABI39_RS02970 at 866.735 kb on + strand, within ABI39_RS02970 at 866.736 kb on - strand, within ABI39_RS02970 at 866.871 kb on - strand, within ABI39_RS02970 at 866.947 kb on + strand, within ABI39_RS02970 at 867.036 kb on - strand, within ABI39_RS02970 at 867.144 kb on + strand, within ABI39_RS02970 at 867.145 kb on - strand, within ABI39_RS02970 at 867.145 kb on - strand, within ABI39_RS02970 at 867.159 kb on - strand, within ABI39_RS02970 at 867.183 kb on + strand at 867.192 kb on + strand at 867.198 kb on + strand at 867.260 kb on + strand at 867.278 kb on + strand at 867.310 kb on + strand at 867.315 kb on + strand at 867.445 kb on + strand, within ABI39_RS02975 at 867.475 kb on + strand, within ABI39_RS02975 at 867.493 kb on + strand, within ABI39_RS02975 at 867.950 kb on + strand, within ABI39_RS02975 at 867.956 kb on - strand, within ABI39_RS02975 at 868.155 kb on - strand, within ABI39_RS02975 at 868.221 kb on + strand, within ABI39_RS02975 at 868.222 kb on - strand, within ABI39_RS02975 at 868.222 kb on - strand, within ABI39_RS02975 at 868.225 kb on + strand, within ABI39_RS02975 at 868.279 kb on - strand, within ABI39_RS02975 at 868.305 kb on + strand, within ABI39_RS02975 at 868.423 kb on - strand at 868.539 kb on - strand at 868.684 kb on - strand, within ABI39_RS02980 at 868.760 kb on + strand, within ABI39_RS02980 at 868.825 kb on - strand, within ABI39_RS02980 at 868.883 kb on - strand, within ABI39_RS02980 at 868.896 kb on + strand, within ABI39_RS02980 at 868.924 kb on + strand, within ABI39_RS02980 at 868.959 kb on + strand, within ABI39_RS02980 at 869.027 kb on + strand, within ABI39_RS02980 at 869.079 kb on + strand, within ABI39_RS02980 at 869.082 kb on + strand, within ABI39_RS02980 at 869.175 kb on - strand at 869.177 kb on + strand at 869.179 kb on + strand at 869.188 kb on - strand at 869.258 kb on + strand, within ABI39_RS02985 at 869.262 kb on - strand, within ABI39_RS02985 at 869.264 kb on + strand, within ABI39_RS02985 at 869.280 kb on - strand, within ABI39_RS02985 at 869.315 kb on + strand, within ABI39_RS02985 at 869.316 kb on - strand, within ABI39_RS02985 at 869.334 kb on - strand, within ABI39_RS02985 at 869.334 kb on - strand, within ABI39_RS02985 at 869.466 kb on + strand, within ABI39_RS02985 at 869.467 kb on - strand, within ABI39_RS02985 at 869.471 kb on - strand, within ABI39_RS02985 at 869.471 kb on - strand, within ABI39_RS02985 at 869.471 kb on - strand, within ABI39_RS02985 at 869.472 kb on + strand, within ABI39_RS02985
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/ml (C) remove 866,375 + -1.3 866,539 + ABI39_RS02970 0.24 -0.5 866,542 + ABI39_RS02970 0.24 -2.4 866,601 - ABI39_RS02970 0.30 -1.7 866,646 + ABI39_RS02970 0.35 -3.0 866,726 - ABI39_RS02970 0.43 -2.8 866,735 + ABI39_RS02970 0.44 -3.8 866,736 - ABI39_RS02970 0.44 -1.8 866,871 - ABI39_RS02970 0.58 -1.9 866,947 + ABI39_RS02970 0.66 -1.9 867,036 - ABI39_RS02970 0.75 -2.4 867,144 + ABI39_RS02970 0.86 -1.0 867,145 - ABI39_RS02970 0.86 -2.6 867,145 - ABI39_RS02970 0.86 -1.3 867,159 - ABI39_RS02970 0.88 -2.5 867,183 + -3.0 867,192 + -1.9 867,198 + -0.4 867,260 + -2.4 867,278 + -3.4 867,310 + -3.8 867,315 + -3.0 867,445 + ABI39_RS02975 0.13 -2.9 867,475 + ABI39_RS02975 0.16 -2.3 867,493 + ABI39_RS02975 0.17 -4.7 867,950 + ABI39_RS02975 0.55 -3.4 867,956 - ABI39_RS02975 0.56 -4.1 868,155 - ABI39_RS02975 0.72 -2.2 868,221 + ABI39_RS02975 0.78 -2.0 868,222 - ABI39_RS02975 0.78 -3.6 868,222 - ABI39_RS02975 0.78 -2.9 868,225 + ABI39_RS02975 0.78 -2.5 868,279 - ABI39_RS02975 0.82 -1.9 868,305 + ABI39_RS02975 0.84 -1.2 868,423 - -3.3 868,539 - -0.8 868,684 - ABI39_RS02980 0.15 -2.7 868,760 + ABI39_RS02980 0.29 -3.4 868,825 - ABI39_RS02980 0.40 -4.9 868,883 - ABI39_RS02980 0.51 -1.4 868,896 + ABI39_RS02980 0.53 -3.3 868,924 + ABI39_RS02980 0.58 -3.7 868,959 + ABI39_RS02980 0.64 -2.4 869,027 + ABI39_RS02980 0.77 -4.1 869,079 + ABI39_RS02980 0.86 -4.9 869,082 + ABI39_RS02980 0.86 -2.6 869,175 - -0.6 869,177 + -3.8 869,179 + -3.8 869,188 - -0.3 869,258 + ABI39_RS02985 0.16 -3.3 869,262 - ABI39_RS02985 0.17 -0.6 869,264 + ABI39_RS02985 0.17 -1.9 869,280 - ABI39_RS02985 0.21 +0.3 869,315 + ABI39_RS02985 0.28 -3.8 869,316 - ABI39_RS02985 0.28 -0.3 869,334 - ABI39_RS02985 0.32 -1.0 869,334 - ABI39_RS02985 0.32 +0.4 869,466 + ABI39_RS02985 0.60 -3.7 869,467 - ABI39_RS02985 0.60 +0.3 869,471 - ABI39_RS02985 0.61 -0.5 869,471 - ABI39_RS02985 0.61 -0.3 869,471 - ABI39_RS02985 0.61 -0.1 869,472 + ABI39_RS02985 0.61 -2.3
Or see this region's nucleotide sequence