Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS21335

Experiment: polygalacturonic; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic; autoclaved 2.5 mg/ml (C)
5,260,903	-		ABI39_RS21330	0.50	-0.7
5,261,057	+		ABI39_RS21330	0.59	+0.2
5,261,065	-		ABI39_RS21330	0.59	-0.4
5,261,071	+		ABI39_RS21330	0.60	+0.2
5,261,072	-		ABI39_RS21330	0.60	-0.3
5,261,073	+		ABI39_RS21330	0.60	-0.2
5,261,118	-		ABI39_RS21330	0.63	+0.7
5,261,299	+		ABI39_RS21330	0.74	-0.9
5,261,340	-		ABI39_RS21330	0.76	+0.4
5,261,361	+		ABI39_RS21330	0.78	+0.5
5,261,420	+		ABI39_RS21330	0.81	-0.3
5,261,423	+		ABI39_RS21330	0.81	-0.4
5,261,429	+		ABI39_RS21330	0.82	-0.7
5,261,431	+		ABI39_RS21330	0.82	+0.1
5,261,432	-		ABI39_RS21330	0.82	+0.2
5,261,432	-		ABI39_RS21330	0.82	+0.0
5,261,518	-		ABI39_RS21330	0.87	-0.7
5,261,582	+				-0.3
5,261,703	+				-0.0
5,261,894	+				-0.0
5,261,951	+				-0.5
5,262,055	+		ABI39_RS21335	0.13	-0.3
5,262,206	+		ABI39_RS21335	0.23	+0.8
5,262,207	-		ABI39_RS21335	0.23	-0.4
5,262,213	-		ABI39_RS21335	0.23	-0.2
5,262,310	+		ABI39_RS21335	0.30	-0.9
5,262,315	-		ABI39_RS21335	0.30	+1.7
5,262,315	-		ABI39_RS21335	0.30	+0.0
5,262,319	-		ABI39_RS21335	0.30	+0.9
5,262,319	-		ABI39_RS21335	0.30	+1.1
5,262,426	-		ABI39_RS21335	0.38	-0.7
5,262,467	-		ABI39_RS21335	0.40	+0.0
5,262,492	-		ABI39_RS21335	0.42	+0.0
5,262,560	+		ABI39_RS21335	0.46	+0.0
5,262,569	-		ABI39_RS21335	0.47	-0.0
5,262,569	-		ABI39_RS21335	0.47	+0.4
5,262,623	+		ABI39_RS21335	0.51	-0.8
5,262,703	-		ABI39_RS21335	0.56	-0.1
5,262,799	-		ABI39_RS21335	0.62	-0.0
5,262,925	+		ABI39_RS21335	0.71	+0.7
5,262,930	-		ABI39_RS21335	0.71	-0.6
5,262,930	-		ABI39_RS21335	0.71	-1.4
5,262,930	-		ABI39_RS21335	0.71	-0.1
5,262,931	+		ABI39_RS21335	0.71	-0.7
5,262,931	+		ABI39_RS21335	0.71	-0.3
5,262,931	+		ABI39_RS21335	0.71	-0.4
5,262,932	-		ABI39_RS21335	0.71	+0.2
5,262,934	+		ABI39_RS21335	0.71	-0.8
5,262,935	-		ABI39_RS21335	0.71	+0.4
5,262,960	+		ABI39_RS21335	0.73	-0.6
5,263,016	+		ABI39_RS21335	0.77	-0.2
5,263,038	-		ABI39_RS21335	0.78	+1.3
5,263,092	-		ABI39_RS21335	0.82	+0.1
5,263,304	+				-0.2
5,263,305	-				-0.8
5,263,386	-				+0.4
5,263,386	-				+2.4
5,263,386	-				+1.2
5,263,386	-				+1.0
5,263,622	+				+0.0
5,263,644	+				-0.0
5,263,650	+				+0.6
5,263,654	-				-0.5
5,263,728	+		ABI39_RS21340	0.11	+0.3
5,263,737	+		ABI39_RS21340	0.11	-1.0
5,263,803	-		ABI39_RS21340	0.13	-1.7
5,263,835	+		ABI39_RS21340	0.14	-0.3
5,263,842	+		ABI39_RS21340	0.14	+1.5
5,263,932	+		ABI39_RS21340	0.17	-0.0
5,263,932	+		ABI39_RS21340	0.17	+0.5
5,263,966	+		ABI39_RS21340	0.18	-0.7
5,263,997	-		ABI39_RS21340	0.19	+0.8
5,264,135	-		ABI39_RS21340	0.23	-0.3
5,264,145	-		ABI39_RS21340	0.23	-1.0