Experiment: polygalacturonic; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS20970 and ABI39_RS20975 are separated by 77 nucleotides ABI39_RS20975 and ABI39_RS20980 are separated by 2 nucleotides ABI39_RS20980 and ABI39_RS20985 are separated by 29 nucleotides ABI39_RS20985 and ABI39_RS20990 are separated by 221 nucleotides
ABI39_RS20970: ABI39_RS20970 - YtxH domain-containing protein, at 5,161,885 to 5,162,082
_RS20970
ABI39_RS20975: ABI39_RS20975 - phage holin family protein, at 5,162,160 to 5,162,516
_RS20975
ABI39_RS20980: ABI39_RS20980 - hypothetical protein, at 5,162,519 to 5,162,785
_RS20980
ABI39_RS20985: ABI39_RS20985 - PD40 domain-containing protein, at 5,162,815 to 5,166,075
_RS20985
ABI39_RS20990: ABI39_RS20990 - D-xylose transporter XylE, at 5,166,297 to 5,167,742
_RS20990
Position (kb) 5162
5163
5164
5165
5166
5167 Strain fitness (log2 ratio) -1
0
1
2
3 at 5161.904 kb on + strand at 5161.948 kb on - strand, within ABI39_RS20970 at 5162.004 kb on - strand, within ABI39_RS20970 at 5162.102 kb on - strand at 5162.187 kb on - strand at 5162.187 kb on - strand at 5162.221 kb on - strand, within ABI39_RS20975 at 5162.318 kb on - strand, within ABI39_RS20975 at 5162.358 kb on + strand, within ABI39_RS20975 at 5162.530 kb on + strand at 5162.831 kb on + strand at 5162.831 kb on + strand at 5162.938 kb on + strand at 5162.941 kb on - strand at 5162.968 kb on - strand at 5163.021 kb on + strand at 5163.075 kb on + strand at 5163.076 kb on - strand at 5163.092 kb on + strand at 5163.093 kb on - strand at 5163.194 kb on + strand, within ABI39_RS20985 at 5163.245 kb on + strand, within ABI39_RS20985 at 5163.248 kb on - strand, within ABI39_RS20985 at 5163.255 kb on + strand, within ABI39_RS20985 at 5163.255 kb on + strand, within ABI39_RS20985 at 5163.331 kb on - strand, within ABI39_RS20985 at 5163.511 kb on + strand, within ABI39_RS20985 at 5163.639 kb on - strand, within ABI39_RS20985 at 5163.824 kb on + strand, within ABI39_RS20985 at 5163.824 kb on + strand, within ABI39_RS20985 at 5163.827 kb on - strand, within ABI39_RS20985 at 5163.870 kb on + strand, within ABI39_RS20985 at 5163.918 kb on + strand, within ABI39_RS20985 at 5163.972 kb on - strand, within ABI39_RS20985 at 5164.171 kb on + strand, within ABI39_RS20985 at 5164.171 kb on + strand, within ABI39_RS20985 at 5164.178 kb on - strand, within ABI39_RS20985 at 5164.230 kb on + strand, within ABI39_RS20985 at 5164.237 kb on + strand, within ABI39_RS20985 at 5164.242 kb on - strand, within ABI39_RS20985 at 5164.242 kb on - strand, within ABI39_RS20985 at 5164.242 kb on - strand, within ABI39_RS20985 at 5164.261 kb on - strand, within ABI39_RS20985 at 5164.261 kb on - strand, within ABI39_RS20985 at 5164.718 kb on - strand, within ABI39_RS20985 at 5164.719 kb on - strand, within ABI39_RS20985 at 5164.719 kb on - strand, within ABI39_RS20985 at 5164.985 kb on + strand, within ABI39_RS20985 at 5165.000 kb on - strand, within ABI39_RS20985 at 5165.081 kb on - strand, within ABI39_RS20985 at 5165.081 kb on - strand, within ABI39_RS20985 at 5165.149 kb on + strand, within ABI39_RS20985 at 5165.149 kb on + strand, within ABI39_RS20985 at 5165.150 kb on - strand, within ABI39_RS20985 at 5165.206 kb on + strand, within ABI39_RS20985 at 5165.240 kb on + strand, within ABI39_RS20985 at 5165.278 kb on - strand, within ABI39_RS20985 at 5165.335 kb on + strand, within ABI39_RS20985 at 5165.385 kb on - strand, within ABI39_RS20985 at 5165.385 kb on - strand, within ABI39_RS20985 at 5165.387 kb on - strand, within ABI39_RS20985 at 5165.388 kb on + strand, within ABI39_RS20985 at 5165.462 kb on - strand, within ABI39_RS20985 at 5165.463 kb on + strand, within ABI39_RS20985 at 5165.567 kb on + strand, within ABI39_RS20985 at 5165.579 kb on + strand, within ABI39_RS20985 at 5165.666 kb on + strand, within ABI39_RS20985 at 5165.710 kb on + strand, within ABI39_RS20985 at 5165.710 kb on + strand, within ABI39_RS20985 at 5165.733 kb on + strand, within ABI39_RS20985 at 5165.776 kb on + strand at 5165.777 kb on - strand at 5165.816 kb on + strand at 5165.816 kb on + strand at 5165.985 kb on + strand at 5166.217 kb on - strand at 5166.249 kb on + strand at 5166.249 kb on + strand at 5166.273 kb on - strand at 5166.446 kb on - strand, within ABI39_RS20990 at 5166.627 kb on - strand, within ABI39_RS20990 at 5166.687 kb on - strand, within ABI39_RS20990 at 5166.791 kb on + strand, within ABI39_RS20990 at 5166.792 kb on - strand, within ABI39_RS20990 at 5166.836 kb on - strand, within ABI39_RS20990 at 5166.836 kb on - strand, within ABI39_RS20990 at 5166.838 kb on + strand, within ABI39_RS20990 at 5166.839 kb on - strand, within ABI39_RS20990 at 5166.851 kb on + strand, within ABI39_RS20990 at 5166.917 kb on + strand, within ABI39_RS20990
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic; autoclaved 2.5 mg/ml (C) remove 5,161,904 + -0.3 5,161,948 - ABI39_RS20970 0.32 +1.9 5,162,004 - ABI39_RS20970 0.60 +1.4 5,162,102 - +0.6 5,162,187 - +2.2 5,162,187 - +0.8 5,162,221 - ABI39_RS20975 0.17 +0.3 5,162,318 - ABI39_RS20975 0.44 +1.2 5,162,358 + ABI39_RS20975 0.55 -0.8 5,162,530 + +0.1 5,162,831 + +1.1 5,162,831 + +0.1 5,162,938 + +0.1 5,162,941 - +1.6 5,162,968 - +2.3 5,163,021 + +1.8 5,163,075 + +1.0 5,163,076 - +2.9 5,163,092 + +0.3 5,163,093 - -0.7 5,163,194 + ABI39_RS20985 0.12 -0.4 5,163,245 + ABI39_RS20985 0.13 +1.4 5,163,248 - ABI39_RS20985 0.13 +1.5 5,163,255 + ABI39_RS20985 0.13 +0.1 5,163,255 + ABI39_RS20985 0.13 +1.0 5,163,331 - ABI39_RS20985 0.16 +1.1 5,163,511 + ABI39_RS20985 0.21 -0.0 5,163,639 - ABI39_RS20985 0.25 +0.0 5,163,824 + ABI39_RS20985 0.31 +1.3 5,163,824 + ABI39_RS20985 0.31 +2.2 5,163,827 - ABI39_RS20985 0.31 -0.0 5,163,870 + ABI39_RS20985 0.32 +1.7 5,163,918 + ABI39_RS20985 0.34 +0.2 5,163,972 - ABI39_RS20985 0.35 +0.4 5,164,171 + ABI39_RS20985 0.42 +1.5 5,164,171 + ABI39_RS20985 0.42 +1.7 5,164,178 - ABI39_RS20985 0.42 +0.6 5,164,230 + ABI39_RS20985 0.43 +2.2 5,164,237 + ABI39_RS20985 0.44 +0.2 5,164,242 - ABI39_RS20985 0.44 +0.7 5,164,242 - ABI39_RS20985 0.44 +0.6 5,164,242 - ABI39_RS20985 0.44 +0.6 5,164,261 - ABI39_RS20985 0.44 -0.0 5,164,261 - ABI39_RS20985 0.44 +0.3 5,164,718 - ABI39_RS20985 0.58 +0.8 5,164,719 - ABI39_RS20985 0.58 +0.5 5,164,719 - ABI39_RS20985 0.58 -0.3 5,164,985 + ABI39_RS20985 0.67 +0.4 5,165,000 - ABI39_RS20985 0.67 +1.6 5,165,081 - ABI39_RS20985 0.69 +0.5 5,165,081 - ABI39_RS20985 0.69 +0.6 5,165,149 + ABI39_RS20985 0.72 +1.1 5,165,149 + ABI39_RS20985 0.72 +0.9 5,165,150 - ABI39_RS20985 0.72 +0.6 5,165,206 + ABI39_RS20985 0.73 -0.1 5,165,240 + ABI39_RS20985 0.74 -0.4 5,165,278 - ABI39_RS20985 0.76 +0.3 5,165,335 + ABI39_RS20985 0.77 +0.3 5,165,385 - ABI39_RS20985 0.79 +0.3 5,165,385 - ABI39_RS20985 0.79 +2.1 5,165,387 - ABI39_RS20985 0.79 -0.2 5,165,388 + ABI39_RS20985 0.79 -0.4 5,165,462 - ABI39_RS20985 0.81 -0.2 5,165,463 + ABI39_RS20985 0.81 +0.4 5,165,567 + ABI39_RS20985 0.84 +0.1 5,165,579 + ABI39_RS20985 0.85 +1.4 5,165,666 + ABI39_RS20985 0.87 +0.2 5,165,710 + ABI39_RS20985 0.89 +0.1 5,165,710 + ABI39_RS20985 0.89 +0.4 5,165,733 + ABI39_RS20985 0.89 +0.2 5,165,776 + +0.6 5,165,777 - -0.5 5,165,816 + +0.7 5,165,816 + +0.4 5,165,985 + -0.4 5,166,217 - -0.2 5,166,249 + +0.5 5,166,249 + +0.8 5,166,273 - -0.4 5,166,446 - ABI39_RS20990 0.10 -0.1 5,166,627 - ABI39_RS20990 0.23 +1.6 5,166,687 - ABI39_RS20990 0.27 -0.1 5,166,791 + ABI39_RS20990 0.34 -1.3 5,166,792 - ABI39_RS20990 0.34 +0.9 5,166,836 - ABI39_RS20990 0.37 +0.2 5,166,836 - ABI39_RS20990 0.37 -1.0 5,166,838 + ABI39_RS20990 0.37 +0.7 5,166,839 - ABI39_RS20990 0.37 -0.3 5,166,851 + ABI39_RS20990 0.38 +0.3 5,166,917 + ABI39_RS20990 0.43 -0.6
Or see this region's nucleotide sequence