Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20900

Experiment: polygalacturonic; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic; autoclaved 2.5 mg/ml (C)
5,146,362	-		ABI39_RS20895	0.58	+0.3
5,146,374	-		ABI39_RS20895	0.59	-0.1
5,146,374	-		ABI39_RS20895	0.59	-0.8
5,146,374	-		ABI39_RS20895	0.59	+0.2
5,146,377	+		ABI39_RS20895	0.59	-0.6
5,146,391	+		ABI39_RS20895	0.60	+0.0
5,146,580	-		ABI39_RS20895	0.72	-1.2
5,146,584	+		ABI39_RS20895	0.72	-0.3
5,146,595	+		ABI39_RS20895	0.73	-0.1
5,146,651	-		ABI39_RS20895	0.77	-0.6
5,146,870	-				-0.2
5,146,870	-				-0.9
5,146,902	-				-1.9
5,146,902	-				+0.4
5,146,943	-				+0.7
5,147,024	-				-0.2
5,147,038	+				+0.8
5,147,043	+				-1.6
5,147,200	-				+1.6
5,147,220	+				-0.6
5,147,224	-				+0.1
5,147,238	+				-1.7
5,147,247	-				-1.8
5,147,284	+				-2.0
5,147,285	-				-1.5
5,147,285	-				-1.2
5,147,329	+		ABI39_RS20900	0.12	-0.7
5,147,335	+		ABI39_RS20900	0.13	-0.8
5,147,339	+		ABI39_RS20900	0.13	-0.7
5,147,374	-		ABI39_RS20900	0.17	-1.8
5,147,398	-		ABI39_RS20900	0.19	-1.0
5,147,440	+		ABI39_RS20900	0.23	-1.3
5,147,490	+		ABI39_RS20900	0.28	+0.6
5,147,695	-		ABI39_RS20900	0.48	-0.2
5,147,717	-		ABI39_RS20900	0.50	-0.1
5,147,817	+		ABI39_RS20900	0.59	-0.6
5,147,835	+		ABI39_RS20900	0.61	-0.3
5,148,019	+		ABI39_RS20900	0.79	-0.9
5,148,021	+		ABI39_RS20900	0.79	-1.6
5,148,022	-		ABI39_RS20900	0.79	-1.9
5,148,024	+		ABI39_RS20900	0.79	-0.8
5,148,028	+		ABI39_RS20900	0.80	-1.5
5,148,035	-		ABI39_RS20900	0.80	-0.8
5,148,035	-		ABI39_RS20900	0.80	-0.5
5,148,101	-		ABI39_RS20900	0.87	-2.4
5,148,112	-		ABI39_RS20900	0.88	-0.7
5,148,115	+		ABI39_RS20900	0.88	-2.8
5,148,116	-		ABI39_RS20900	0.88	-0.3
5,148,117	+		ABI39_RS20900	0.88	-1.9
5,148,121	+		ABI39_RS20900	0.89	-0.6
5,148,122	-		ABI39_RS20900	0.89	-0.4
5,148,122	-		ABI39_RS20900	0.89	-0.4
5,148,394	+				-0.0
5,148,395	-				-0.4
5,148,465	+				+0.5
5,148,466	-				-0.1
5,148,490	+				-1.0
5,148,491	-				-0.2
5,148,607	-		ABI39_RS20905	0.19	-0.8
5,148,677	+		ABI39_RS20905	0.28	-1.1
5,148,755	+		ABI39_RS20905	0.38	+2.8
5,148,756	-		ABI39_RS20905	0.38	+0.0
5,148,757	+		ABI39_RS20905	0.38	-0.1
5,148,758	-		ABI39_RS20905	0.39	+0.9
5,148,784	-		ABI39_RS20905	0.42	+0.2
5,148,971	+		ABI39_RS20905	0.66	-0.3
5,149,070	-		ABI39_RS20905	0.79	+1.0
5,149,107	+		ABI39_RS20905	0.84	+0.2
5,149,112	+		ABI39_RS20905	0.85	-0.4