Experiment: polygalacturonic; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00465 and ABI39_RS00470 are separated by 78 nucleotides ABI39_RS00470 and ABI39_RS00475 are separated by 950 nucleotides
ABI39_RS00465: ABI39_RS00465 - carbon starvation protein A, at 131,511 to 132,941
_RS00465
ABI39_RS00470: ABI39_RS00470 - family 10 glycosylhydrolase, at 133,020 to 134,699
_RS00470
ABI39_RS00475: ABI39_RS00475 - phosphoribosylformylglycinamidine cyclo-ligase, at 135,650 to 136,819
_RS00475
Position (kb) 133
134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 132.050 kb on + strand, within ABI39_RS00465 at 132.279 kb on - strand, within ABI39_RS00465 at 132.281 kb on + strand, within ABI39_RS00465 at 132.282 kb on - strand, within ABI39_RS00465 at 132.354 kb on - strand, within ABI39_RS00465 at 132.360 kb on + strand, within ABI39_RS00465 at 132.420 kb on - strand, within ABI39_RS00465 at 132.428 kb on + strand, within ABI39_RS00465 at 132.564 kb on + strand, within ABI39_RS00465 at 132.565 kb on - strand, within ABI39_RS00465 at 132.730 kb on - strand, within ABI39_RS00465 at 132.731 kb on + strand, within ABI39_RS00465 at 132.732 kb on - strand, within ABI39_RS00465 at 132.750 kb on + strand, within ABI39_RS00465 at 132.759 kb on + strand, within ABI39_RS00465 at 132.761 kb on + strand, within ABI39_RS00465 at 132.926 kb on + strand at 132.988 kb on + strand at 133.037 kb on - strand at 133.085 kb on + strand at 133.153 kb on + strand at 133.189 kb on + strand, within ABI39_RS00470 at 133.198 kb on + strand, within ABI39_RS00470 at 133.198 kb on + strand, within ABI39_RS00470 at 133.270 kb on - strand, within ABI39_RS00470 at 133.270 kb on - strand, within ABI39_RS00470 at 133.311 kb on - strand, within ABI39_RS00470 at 133.549 kb on + strand, within ABI39_RS00470 at 133.597 kb on - strand, within ABI39_RS00470 at 133.644 kb on + strand, within ABI39_RS00470 at 133.704 kb on - strand, within ABI39_RS00470 at 133.737 kb on - strand, within ABI39_RS00470 at 134.309 kb on + strand, within ABI39_RS00470 at 134.381 kb on + strand, within ABI39_RS00470 at 134.500 kb on + strand, within ABI39_RS00470 at 134.533 kb on + strand at 134.558 kb on - strand at 134.561 kb on + strand at 134.644 kb on + strand at 134.645 kb on - strand at 134.646 kb on + strand at 134.648 kb on + strand at 134.649 kb on - strand at 134.733 kb on - strand at 134.796 kb on - strand at 134.991 kb on - strand at 135.002 kb on - strand at 135.159 kb on + strand at 135.335 kb on + strand at 135.374 kb on - strand at 135.450 kb on + strand at 135.555 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic; autoclaved 2.5 mg/ml (C) remove 132,050 + ABI39_RS00465 0.38 +0.1 132,279 - ABI39_RS00465 0.54 +1.3 132,281 + ABI39_RS00465 0.54 -0.4 132,282 - ABI39_RS00465 0.54 +0.4 132,354 - ABI39_RS00465 0.59 +0.0 132,360 + ABI39_RS00465 0.59 +2.6 132,420 - ABI39_RS00465 0.64 -0.4 132,428 + ABI39_RS00465 0.64 -0.2 132,564 + ABI39_RS00465 0.74 +1.2 132,565 - ABI39_RS00465 0.74 +0.4 132,730 - ABI39_RS00465 0.85 +0.0 132,731 + ABI39_RS00465 0.85 +0.7 132,732 - ABI39_RS00465 0.85 +0.2 132,750 + ABI39_RS00465 0.87 +1.7 132,759 + ABI39_RS00465 0.87 -0.1 132,761 + ABI39_RS00465 0.87 -1.0 132,926 + -1.5 132,988 + +0.0 133,037 - -1.3 133,085 + -2.1 133,153 + -1.0 133,189 + ABI39_RS00470 0.10 -0.4 133,198 + ABI39_RS00470 0.11 -0.7 133,198 + ABI39_RS00470 0.11 -0.0 133,270 - ABI39_RS00470 0.15 -1.2 133,270 - ABI39_RS00470 0.15 +0.7 133,311 - ABI39_RS00470 0.17 -1.1 133,549 + ABI39_RS00470 0.31 -1.2 133,597 - ABI39_RS00470 0.34 -1.2 133,644 + ABI39_RS00470 0.37 -0.4 133,704 - ABI39_RS00470 0.41 -0.0 133,737 - ABI39_RS00470 0.43 -2.8 134,309 + ABI39_RS00470 0.77 -1.6 134,381 + ABI39_RS00470 0.81 -1.0 134,500 + ABI39_RS00470 0.88 -0.8 134,533 + -0.4 134,558 - -0.5 134,561 + -0.7 134,644 + -1.5 134,645 - -0.3 134,646 + -0.4 134,648 + -0.7 134,649 - -0.6 134,733 - -0.8 134,796 - -0.0 134,991 - +0.1 135,002 - -1.4 135,159 + -0.3 135,335 + +0.5 135,374 - -0.3 135,450 + +0.9 135,555 + -0.0
Or see this region's nucleotide sequence