Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18955

Experiment: TP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdosP and ddpX are separated by 257 nucleotidesddpX and ddpA are separated by 13 nucleotides NOLOHH_18950: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 3,722,621 to 3,725,020 dosP NOLOHH_18955: ddpX - D-alanyl-D-alanine dipeptidase, at 3,725,278 to 3,725,859 ddpX NOLOHH_18960: ddpA - putative D,D-dipeptide-binding periplasmic protein DdpA, at 3,725,873 to 3,727,423 ddpA Position (kb) 3725 3726Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3725.402 kb on + strand, within ddpXat 3725.539 kb on + strand, within ddpXat 3725.539 kb on + strand, within ddpXat 3725.830 kb on - strandat 3725.831 kb on + strandat 3726.022 kb on + strandat 3726.023 kb on - strandat 3726.353 kb on + strand, within ddpAat 3726.545 kb on - strand, within ddpAat 3726.707 kb on + strand, within ddpAat 3726.708 kb on - strand, within ddpA

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Per-strain Table

Position Strand Gene LocusTag Fraction TP15
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3,725,402 + ddpX NOLOHH_18955 0.21 +0.9
3,725,539 + ddpX NOLOHH_18955 0.45 -0.6
3,725,539 + ddpX NOLOHH_18955 0.45 +0.5
3,725,830 - +0.8
3,725,831 + +0.7
3,726,022 + +3.5
3,726,023 - -1.9
3,726,353 + ddpA NOLOHH_18960 0.31 +2.5
3,726,545 - ddpA NOLOHH_18960 0.43 +0.7
3,726,707 + ddpA NOLOHH_18960 0.54 +1.7
3,726,708 - ddpA NOLOHH_18960 0.54 -0.3

Or see this region's nucleotide sequence