Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS22435

Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
4,655,900	+				-2.0
4,655,902	+				-1.1
4,655,902	+				-0.3
4,655,903	-				-0.7
4,655,903	-				+2.1
4,655,903	-				+0.2
4,656,002	+				-0.3
4,656,003	-				+0.3
4,656,003	-				+1.6
4,656,014	-				+0.5
4,656,051	+				-0.6
4,656,053	+				+0.5
4,656,054	-				-0.4
4,656,054	-				-0.4
4,656,054	-				-0.6
4,656,076	+				-0.6
4,656,175	+		ABI39_RS18455	0.14	-1.4
4,656,176	-		ABI39_RS18455	0.14	-0.4
4,656,300	+		ABI39_RS18455	0.43	-0.2
4,656,302	+		ABI39_RS18455	0.43	-0.2
4,656,303	-		ABI39_RS18455	0.44	+0.0
4,656,303	-		ABI39_RS18455	0.44	-0.4
4,656,320	+		ABI39_RS18455	0.48	-0.3
4,656,323	+		ABI39_RS18455	0.48	+1.0
4,656,353	+		ABI39_RS18455	0.55	+0.1
4,656,353	+		ABI39_RS18455	0.55	-0.5
4,656,354	-		ABI39_RS18455	0.56	-0.2
4,656,355	+		ABI39_RS18455	0.56	+0.3
4,656,376	-		ABI39_RS18455	0.61	+0.8
4,656,383	-		ABI39_RS18455	0.62	-0.9
4,656,436	+		ABI39_RS18455	0.75	-0.7
4,656,465	+		ABI39_RS18455	0.82	+0.3
4,656,492	-		ABI39_RS18455	0.88	-0.4
4,656,622	+		ABI39_RS22435	0.13	+0.1
4,656,625	+		ABI39_RS22435	0.14	-0.4
4,656,658	+		ABI39_RS22435	0.20	+0.6
4,656,700	+		ABI39_RS22435	0.28	-0.1
4,656,701	-		ABI39_RS22435	0.28	-0.0
4,656,702	+		ABI39_RS22435	0.28	-1.7
4,656,705	+		ABI39_RS22435	0.28	+0.5
4,656,731	-		ABI39_RS22435	0.33	+0.7
4,656,736	-		ABI39_RS22435	0.34	+0.5
4,656,736	-		ABI39_RS22435	0.34	+0.1
4,656,739	+		ABI39_RS22435	0.35	+0.3
4,656,739	+		ABI39_RS22435	0.35	-0.3
4,656,782	+		ABI39_RS22435	0.42	-0.1
4,656,782	+		ABI39_RS22435	0.42	-1.4
4,656,783	-		ABI39_RS22435	0.43	-0.7
4,656,783	-		ABI39_RS22435	0.43	+0.4
4,656,783	-		ABI39_RS22435	0.43	-0.9
4,656,783	-		ABI39_RS22435	0.43	-0.3
4,656,831	+		ABI39_RS22435	0.51	+0.1
4,656,852	+		ABI39_RS22435	0.55	-0.1
4,656,872	-		ABI39_RS22435	0.59	-0.4
4,656,937	-		ABI39_RS22435	0.70	-0.3
4,656,978	+		ABI39_RS22435	0.78	-1.0
4,656,985	-		ABI39_RS22435	0.79	+0.1
4,657,057	+				+0.5
4,657,058	-				-0.1
4,657,193	-		ABI39_RS22855	0.44	+0.4
4,657,196	+		ABI39_RS22855	0.46	-0.8
4,657,361	+				-0.0
4,657,369	+				+0.5
4,657,403	-				+0.5
4,657,404	+				-1.2
4,657,453	+				+0.8
4,657,456	-				+0.4
4,657,456	-				+0.4
4,657,464	+				-0.1
4,657,464	+				+0.4
4,657,465	-				+0.8
4,657,465	-				+0.2
4,657,492	+				-1.1
4,657,493	-				-0.2
4,657,595	+				+0.1
4,657,628	+				+0.2
4,657,693	+				-0.1
4,657,711	+				-0.5
4,657,814	-		ABI39_RS18465	0.19	-0.7
4,657,815	+		ABI39_RS18465	0.19	-0.1
4,657,815	+		ABI39_RS18465	0.19	+0.6
4,657,851	-		ABI39_RS18465	0.24	+0.4
4,657,892	+		ABI39_RS18465	0.28	-0.1
4,657,933	-		ABI39_RS18465	0.33	+0.1
4,657,937	+		ABI39_RS18465	0.34	-0.8
4,657,939	+		ABI39_RS18465	0.34	-0.2
4,657,951	+		ABI39_RS18465	0.35	-0.8
4,657,951	+		ABI39_RS18465	0.35	+0.1
4,657,953	+		ABI39_RS18465	0.35	+0.2
4,657,953	+		ABI39_RS18465	0.35	+0.2
4,657,956	+		ABI39_RS18465	0.36	+1.2
4,657,995	+		ABI39_RS18465	0.40	+0.1
4,657,995	+		ABI39_RS18465	0.40	+0.3
4,657,995	+		ABI39_RS18465	0.40	+0.3
4,658,039	+		ABI39_RS18465	0.45	-0.4
4,658,095	+		ABI39_RS18465	0.52	+0.2