Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS19000

Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
4,780,941	-				+0.5
4,780,976	+				-1.8
4,780,979	+				+0.6
4,780,987	+				+0.3
4,780,989	+				-0.4
4,781,079	-				-0.0
4,781,106	-				+0.3
4,781,117	+				-0.1
4,781,140	+				-0.8
4,781,141	-				+0.6
4,781,141	-				+1.3
4,781,194	+				+0.0
4,781,332	-		ABI39_RS18995	0.11	+0.0
4,781,421	+		ABI39_RS18995	0.26	+0.6
4,781,482	-		ABI39_RS18995	0.37	+0.7
4,781,483	+		ABI39_RS18995	0.37	-0.4
4,781,483	+		ABI39_RS18995	0.37	+0.8
4,781,483	+		ABI39_RS18995	0.37	-0.9
4,781,483	+		ABI39_RS18995	0.37	-0.0
4,781,517	-		ABI39_RS18995	0.43	-1.8
4,781,526	-		ABI39_RS18995	0.44	+0.3
4,781,721	-		ABI39_RS18995	0.78	+0.2
4,781,721	-		ABI39_RS18995	0.78	-0.1
4,781,763	+		ABI39_RS18995	0.85	-0.3
4,781,893	-				-0.2
4,781,921	-				+0.7
4,781,973	+				+1.0
4,781,983	-				+0.4
4,782,190	-		ABI39_RS19000	0.38	+0.2
4,782,190	-		ABI39_RS19000	0.38	-0.3
4,782,193	+		ABI39_RS19000	0.39	-0.3
4,782,193	+		ABI39_RS19000	0.39	-0.2
4,782,195	+		ABI39_RS19000	0.39	+0.1
4,782,202	-		ABI39_RS19000	0.40	+0.3
4,782,242	-		ABI39_RS19000	0.46	+0.3
4,782,266	+		ABI39_RS19000	0.50	+0.7
4,782,348	+		ABI39_RS19000	0.62	-0.7
4,782,364	+		ABI39_RS19000	0.65	+0.7
4,782,365	-		ABI39_RS19000	0.65	+0.2
4,782,365	-		ABI39_RS19000	0.65	-1.0
4,782,366	+		ABI39_RS19000	0.65	-1.5
4,782,367	-		ABI39_RS19000	0.65	+0.8
4,782,367	-		ABI39_RS19000	0.65	+0.2
4,782,377	+		ABI39_RS19000	0.67	+0.4
4,782,397	-		ABI39_RS19000	0.70	+0.8
4,782,440	-		ABI39_RS19000	0.76	-0.5
4,782,456	+		ABI39_RS19000	0.78	-0.1
4,782,469	-		ABI39_RS19000	0.80	-0.1
4,782,469	-		ABI39_RS19000	0.80	+0.2
4,782,470	+		ABI39_RS19000	0.81	-0.3
4,782,500	-		ABI39_RS19000	0.85	-0.7
4,782,500	-		ABI39_RS19000	0.85	+1.0
4,782,505	+		ABI39_RS19000	0.86	-0.3
4,782,514	-		ABI39_RS19000	0.87	-0.2
4,782,521	-		ABI39_RS19000	0.88	-0.6
4,782,534	+				-0.3
4,782,600	-				+0.2
4,782,642	-				+0.1
4,782,668	-				-0.1
4,782,729	-				+0.3
4,782,806	-				+0.4
4,782,809	+				-0.8
4,782,809	+				+0.2
4,782,823	+				-0.4
4,782,824	-				+0.1
4,783,013	+		ABI39_RS19005	0.15	-0.1
4,783,026	-		ABI39_RS19005	0.16	-0.2
4,783,026	-		ABI39_RS19005	0.16	+0.4
4,783,188	+		ABI39_RS19005	0.22	-1.1
4,783,188	+		ABI39_RS19005	0.22	+0.8
4,783,310	+		ABI39_RS19005	0.27	+0.5
4,783,328	+		ABI39_RS19005	0.27	-0.4
4,783,359	-		ABI39_RS19005	0.29	+0.4
4,783,371	-		ABI39_RS19005	0.29	+0.7
4,783,391	+		ABI39_RS19005	0.30	-1.3
4,783,392	-		ABI39_RS19005	0.30	+0.9
4,783,393	+		ABI39_RS19005	0.30	+0.8
4,783,394	-		ABI39_RS19005	0.30	+0.1
4,783,394	-		ABI39_RS19005	0.30	+0.9
4,783,571	-		ABI39_RS19005	0.37	+1.0
4,783,573	-		ABI39_RS19005	0.37	-0.3