Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS16775

Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
4,255,669	-				-0.7
4,256,003	-		ABI39_RS16765	0.47	-0.6
4,256,107	+		ABI39_RS16765	0.61	+0.1
4,256,117	-		ABI39_RS16765	0.62	-0.3
4,256,210	-		ABI39_RS16765	0.74	+1.0
4,256,236	+		ABI39_RS16765	0.78	-0.2
4,256,325	+		ABI39_RS16765	0.89	-0.1
4,256,539	+		ABI39_RS16770	0.44	-0.9
4,256,626	-		ABI39_RS16770	0.82	+1.5
4,256,626	-		ABI39_RS16770	0.82	+0.9
4,256,663	+				+1.1
4,256,667	+				-1.3
4,256,861	-		ABI39_RS16775	0.18	+0.1
4,256,932	-		ABI39_RS16775	0.24	+0.7
4,256,968	-		ABI39_RS16775	0.28	+0.1
4,257,010	-		ABI39_RS16775	0.32	-0.6
4,257,055	+		ABI39_RS16775	0.36	-0.2
4,257,188	+		ABI39_RS16775	0.48	-1.7
4,257,218	+		ABI39_RS16775	0.51	+0.2
4,257,218	+		ABI39_RS16775	0.51	-1.8
4,257,219	-		ABI39_RS16775	0.51	-0.9
4,257,219	-		ABI39_RS16775	0.51	-0.9
4,257,263	-		ABI39_RS16775	0.55	+0.2
4,257,388	-		ABI39_RS16775	0.67	-0.1
4,257,390	+		ABI39_RS16775	0.67	-0.2
4,257,393	+		ABI39_RS16775	0.67	+0.6
4,257,394	-		ABI39_RS16775	0.67	-0.1
4,257,442	-		ABI39_RS16775	0.72	-0.1
4,257,465	+		ABI39_RS16775	0.74	+1.0
4,257,607	+		ABI39_RS16775	0.87	-0.6
4,257,645	+				+1.8
4,257,686	+				-0.6
4,257,687	-				+0.3
4,257,688	+				+0.3
4,257,688	+				+0.6
4,257,689	-				+0.4
4,257,690	+				-0.6
4,257,718	-				+0.3
4,257,773	+				+0.1
4,257,794	+				-0.8
4,257,799	-				-0.0
4,257,799	-				+0.8
4,257,863	-		ABI39_RS16780	0.17	+0.5
4,257,911	-		ABI39_RS16780	0.25	-0.0
4,257,984	+		ABI39_RS16780	0.36	+0.2
4,257,985	-		ABI39_RS16780	0.36	-0.1
4,257,985	-		ABI39_RS16780	0.36	+0.4
4,258,006	-		ABI39_RS16780	0.40	-0.6
4,258,025	+		ABI39_RS16780	0.43	-0.4
4,258,108	+		ABI39_RS16780	0.56	+0.2
4,258,167	-		ABI39_RS16780	0.65	+0.9
4,258,167	-		ABI39_RS16780	0.65	+0.2
4,258,180	+		ABI39_RS16780	0.67	+1.0
4,258,181	-		ABI39_RS16780	0.67	-0.6
4,258,181	-		ABI39_RS16780	0.67	+0.1
4,258,186	-		ABI39_RS16780	0.68	+0.5
4,258,186	-		ABI39_RS16780	0.68	+0.5
4,258,200	+		ABI39_RS16780	0.70	-0.6
4,258,230	-		ABI39_RS16780	0.75	+0.5
4,258,295	+		ABI39_RS16780	0.85	-0.5
4,258,325	+				+0.2
4,258,358	-				-0.0
4,258,387	-				+0.9
4,258,390	-				-1.4
4,258,393	-				+0.1
4,258,394	+				+0.8
4,258,394	+				-0.1
4,258,528	+				-0.4
4,258,528	+				+0.1
4,258,569	+		ABI39_RS16785	0.11	+0.0
4,258,574	-		ABI39_RS16785	0.11	+0.5
4,258,583	+		ABI39_RS16785	0.12	-0.6
4,258,643	-		ABI39_RS16785	0.16	+0.8
4,258,691	-		ABI39_RS16785	0.19	+1.2
4,258,700	+		ABI39_RS16785	0.19	+0.8
4,258,725	-		ABI39_RS16785	0.21	+0.8