Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS16425 and ABI39_RS16430 are separated by 31 nucleotides ABI39_RS16430 and ABI39_RS16435 are separated by 418 nucleotides ABI39_RS16435 and ABI39_RS16440 are separated by 253 nucleotides
ABI39_RS16425: ABI39_RS16425 - site-specific integrase, at 4,174,093 to 4,175,382
_RS16425
ABI39_RS16430: ABI39_RS16430 - site-specific integrase, at 4,175,414 to 4,176,637
_RS16430
ABI39_RS16435: ABI39_RS16435 - hypothetical protein, at 4,177,056 to 4,177,298
_RS16435
ABI39_RS16440: ABI39_RS16440 - DUF1622 domain-containing protein, at 4,177,552 to 4,177,893
_RS16440
Position (kb) 4175
4176
4177 Strain fitness (log2 ratio) -1
0
1
2 at 4174.523 kb on + strand, within ABI39_RS16425 at 4174.859 kb on + strand, within ABI39_RS16425 at 4174.888 kb on + strand, within ABI39_RS16425 at 4175.273 kb on - strand at 4175.360 kb on - strand at 4175.368 kb on - strand at 4175.410 kb on + strand at 4175.424 kb on - strand at 4175.648 kb on - strand, within ABI39_RS16430 at 4175.970 kb on + strand, within ABI39_RS16430 at 4176.133 kb on - strand, within ABI39_RS16430 at 4176.186 kb on + strand, within ABI39_RS16430 at 4176.400 kb on - strand, within ABI39_RS16430 at 4176.643 kb on + strand at 4176.679 kb on + strand at 4176.834 kb on - strand at 4176.879 kb on + strand at 4176.879 kb on + strand at 4176.910 kb on + strand at 4176.941 kb on - strand at 4177.050 kb on + strand at 4177.052 kb on + strand at 4177.202 kb on + strand, within ABI39_RS16435 at 4177.234 kb on - strand, within ABI39_RS16435 at 4177.235 kb on + strand, within ABI39_RS16435 at 4177.293 kb on - strand at 4177.314 kb on + strand at 4177.391 kb on - strand at 4177.444 kb on + strand at 4177.453 kb on + strand at 4177.478 kb on - strand at 4177.616 kb on - strand, within ABI39_RS16440 at 4177.626 kb on + strand, within ABI39_RS16440
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) remove 4,174,523 + ABI39_RS16425 0.33 +0.3 4,174,859 + ABI39_RS16425 0.59 +0.4 4,174,888 + ABI39_RS16425 0.62 +2.1 4,175,273 - -1.3 4,175,360 - +0.9 4,175,368 - +0.8 4,175,410 + -1.7 4,175,424 - -0.5 4,175,648 - ABI39_RS16430 0.19 +0.4 4,175,970 + ABI39_RS16430 0.45 -0.2 4,176,133 - ABI39_RS16430 0.59 +0.8 4,176,186 + ABI39_RS16430 0.63 +0.3 4,176,400 - ABI39_RS16430 0.81 +0.5 4,176,643 + +0.2 4,176,679 + -0.3 4,176,834 - -1.1 4,176,879 + -0.7 4,176,879 + -0.3 4,176,910 + +0.6 4,176,941 - -0.3 4,177,050 + -0.2 4,177,052 + -0.4 4,177,202 + ABI39_RS16435 0.60 -0.2 4,177,234 - ABI39_RS16435 0.73 +1.4 4,177,235 + ABI39_RS16435 0.74 +0.2 4,177,293 - -0.6 4,177,314 + -0.1 4,177,391 - -0.9 4,177,444 + -1.3 4,177,453 + +0.3 4,177,478 - -1.4 4,177,616 - ABI39_RS16440 0.19 -0.1 4,177,626 + ABI39_RS16440 0.22 -0.2
Or see this region's nucleotide sequence