Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01835 and ABI39_RS01840 are separated by 865 nucleotides ABI39_RS01840 and ABI39_RS01845 are separated by 4 nucleotides ABI39_RS01845 and ABI39_RS01850 are separated by 2 nucleotides ABI39_RS01850 and ABI39_RS01855 are separated by 5 nucleotides
ABI39_RS01835: ABI39_RS01835 - NUDIX domain-containing protein, at 545,979 to 546,479
_RS01835
ABI39_RS01840: ABI39_RS01840 - hypothetical protein, at 547,345 to 547,773
_RS01840
ABI39_RS01845: ABI39_RS01845 - DJ-1/PfpI family protein, at 547,778 to 548,395
_RS01845
ABI39_RS01850: ABI39_RS01850 - DUF3795 domain-containing protein, at 548,398 to 548,742
_RS01850
ABI39_RS01855: ABI39_RS01855 - pyridoxamine 5'-phosphate oxidase family protein, at 548,748 to 549,428
_RS01855
Position (kb) 547
548 Strain fitness (log2 ratio) -1
0
1
2 at 546.433 kb on + strand at 546.570 kb on + strand at 546.955 kb on + strand at 546.963 kb on + strand at 546.969 kb on + strand at 547.007 kb on + strand at 547.007 kb on + strand at 547.013 kb on + strand at 547.071 kb on - strand at 547.099 kb on + strand at 547.116 kb on + strand at 547.214 kb on - strand at 547.264 kb on + strand at 547.339 kb on - strand at 547.536 kb on + strand, within ABI39_RS01840 at 547.544 kb on + strand, within ABI39_RS01840 at 547.777 kb on - strand at 547.995 kb on - strand, within ABI39_RS01845 at 547.995 kb on - strand, within ABI39_RS01845 at 548.025 kb on - strand, within ABI39_RS01845 at 548.025 kb on - strand, within ABI39_RS01845 at 548.261 kb on - strand, within ABI39_RS01845 at 548.284 kb on - strand, within ABI39_RS01845 at 548.305 kb on + strand, within ABI39_RS01845 at 548.334 kb on - strand at 548.362 kb on + strand at 548.373 kb on - strand at 548.376 kb on + strand at 548.378 kb on + strand at 548.379 kb on - strand at 548.400 kb on - strand at 548.475 kb on - strand, within ABI39_RS01850 at 548.619 kb on + strand, within ABI39_RS01850 at 548.734 kb on - strand at 548.746 kb on + strand at 548.746 kb on + strand at 548.746 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) remove 546,433 + +0.6 546,570 + -0.5 546,955 + +0.5 546,963 + +0.1 546,969 + -1.3 547,007 + +0.3 547,007 + +0.6 547,013 + -0.1 547,071 - -1.1 547,099 + +0.1 547,116 + -0.3 547,214 - +0.3 547,264 + -1.1 547,339 - +0.6 547,536 + ABI39_RS01840 0.45 +0.1 547,544 + ABI39_RS01840 0.46 +0.7 547,777 - -0.5 547,995 - ABI39_RS01845 0.35 -0.1 547,995 - ABI39_RS01845 0.35 +0.1 548,025 - ABI39_RS01845 0.40 -0.1 548,025 - ABI39_RS01845 0.40 -0.1 548,261 - ABI39_RS01845 0.78 -0.5 548,284 - ABI39_RS01845 0.82 +0.4 548,305 + ABI39_RS01845 0.85 -0.5 548,334 - -0.3 548,362 + +2.1 548,373 - +0.0 548,376 + +0.1 548,378 + -0.3 548,379 - +0.1 548,400 - +0.9 548,475 - ABI39_RS01850 0.22 -0.3 548,619 + ABI39_RS01850 0.64 -0.4 548,734 - -0.1 548,746 + +0.0 548,746 + +0.0 548,746 + +0.4
Or see this region's nucleotide sequence