Experiment: Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00150 and ABI39_RS00155 overlap by 4 nucleotides ABI39_RS00155 and ABI39_RS00160 are separated by 12 nucleotides
ABI39_RS00150: ABI39_RS00150 - alpha-glucuronidase, at 35,545 to 37,590
_RS00150
ABI39_RS00155: ABI39_RS00155 - glycosyl hydrolase 115 family protein, at 37,587 to 40,181
_RS00155
ABI39_RS00160: ABI39_RS00160 - glycosyl hydrolase 43 family protein, at 40,194 to 41,777
_RS00160
Position (kb) 37
38
39
40
41 Strain fitness (log2 ratio) -2
-1
0
1 at 36.806 kb on - strand, within ABI39_RS00150 at 36.902 kb on + strand, within ABI39_RS00150 at 36.910 kb on + strand, within ABI39_RS00150 at 37.001 kb on - strand, within ABI39_RS00150 at 37.196 kb on - strand, within ABI39_RS00150 at 37.394 kb on - strand at 37.418 kb on + strand at 37.640 kb on - strand at 37.640 kb on - strand at 37.640 kb on - strand at 37.643 kb on + strand at 37.644 kb on - strand at 37.721 kb on - strand at 37.721 kb on - strand at 37.806 kb on + strand at 37.974 kb on - strand, within ABI39_RS00155 at 38.036 kb on + strand, within ABI39_RS00155 at 38.143 kb on + strand, within ABI39_RS00155 at 38.226 kb on - strand, within ABI39_RS00155 at 38.232 kb on + strand, within ABI39_RS00155 at 38.288 kb on - strand, within ABI39_RS00155 at 38.373 kb on + strand, within ABI39_RS00155 at 38.373 kb on + strand, within ABI39_RS00155 at 38.373 kb on + strand, within ABI39_RS00155 at 38.522 kb on - strand, within ABI39_RS00155 at 38.522 kb on - strand, within ABI39_RS00155 at 38.568 kb on - strand, within ABI39_RS00155 at 38.568 kb on - strand, within ABI39_RS00155 at 38.627 kb on + strand, within ABI39_RS00155 at 38.684 kb on + strand, within ABI39_RS00155 at 38.750 kb on + strand, within ABI39_RS00155 at 38.894 kb on - strand, within ABI39_RS00155 at 38.905 kb on + strand, within ABI39_RS00155 at 38.993 kb on + strand, within ABI39_RS00155 at 39.028 kb on + strand, within ABI39_RS00155 at 39.028 kb on + strand, within ABI39_RS00155 at 39.054 kb on - strand, within ABI39_RS00155 at 39.107 kb on + strand, within ABI39_RS00155 at 39.126 kb on + strand, within ABI39_RS00155 at 39.394 kb on - strand, within ABI39_RS00155 at 39.395 kb on + strand, within ABI39_RS00155 at 39.395 kb on + strand, within ABI39_RS00155 at 39.536 kb on - strand, within ABI39_RS00155 at 39.548 kb on - strand, within ABI39_RS00155 at 39.730 kb on + strand, within ABI39_RS00155 at 39.906 kb on - strand, within ABI39_RS00155 at 39.906 kb on - strand, within ABI39_RS00155 at 39.909 kb on + strand, within ABI39_RS00155 at 39.909 kb on + strand, within ABI39_RS00155 at 39.910 kb on - strand, within ABI39_RS00155 at 39.910 kb on - strand, within ABI39_RS00155 at 39.914 kb on + strand, within ABI39_RS00155 at 39.938 kb on + strand at 39.940 kb on + strand at 39.975 kb on - strand at 40.117 kb on - strand at 40.118 kb on + strand at 40.118 kb on + strand at 40.184 kb on + strand at 40.218 kb on + strand at 40.218 kb on + strand at 40.253 kb on - strand at 40.665 kb on - strand, within ABI39_RS00160 at 40.967 kb on + strand, within ABI39_RS00160 at 41.003 kb on + strand, within ABI39_RS00160
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) remove 36,806 - ABI39_RS00150 0.62 +0.5 36,902 + ABI39_RS00150 0.66 +0.0 36,910 + ABI39_RS00150 0.67 +0.6 37,001 - ABI39_RS00150 0.71 +0.8 37,196 - ABI39_RS00150 0.81 -1.5 37,394 - +0.4 37,418 + -0.8 37,640 - +0.2 37,640 - +0.4 37,640 - -0.1 37,643 + -0.2 37,644 - -0.2 37,721 - -1.5 37,721 - +1.0 37,806 + -0.4 37,974 - ABI39_RS00155 0.15 +0.4 38,036 + ABI39_RS00155 0.17 +1.0 38,143 + ABI39_RS00155 0.21 +0.8 38,226 - ABI39_RS00155 0.25 +1.5 38,232 + ABI39_RS00155 0.25 +0.7 38,288 - ABI39_RS00155 0.27 +0.2 38,373 + ABI39_RS00155 0.30 -0.0 38,373 + ABI39_RS00155 0.30 +0.0 38,373 + ABI39_RS00155 0.30 +0.2 38,522 - ABI39_RS00155 0.36 +1.4 38,522 - ABI39_RS00155 0.36 +0.1 38,568 - ABI39_RS00155 0.38 +0.5 38,568 - ABI39_RS00155 0.38 -0.0 38,627 + ABI39_RS00155 0.40 -0.8 38,684 + ABI39_RS00155 0.42 -0.1 38,750 + ABI39_RS00155 0.45 -0.8 38,894 - ABI39_RS00155 0.50 -1.3 38,905 + ABI39_RS00155 0.51 +0.8 38,993 + ABI39_RS00155 0.54 -1.7 39,028 + ABI39_RS00155 0.56 -0.2 39,028 + ABI39_RS00155 0.56 -0.2 39,054 - ABI39_RS00155 0.57 +0.2 39,107 + ABI39_RS00155 0.59 -0.5 39,126 + ABI39_RS00155 0.59 -1.6 39,394 - ABI39_RS00155 0.70 -2.5 39,395 + ABI39_RS00155 0.70 -0.3 39,395 + ABI39_RS00155 0.70 +0.8 39,536 - ABI39_RS00155 0.75 +1.0 39,548 - ABI39_RS00155 0.76 -0.1 39,730 + ABI39_RS00155 0.83 +0.7 39,906 - ABI39_RS00155 0.89 +0.5 39,906 - ABI39_RS00155 0.89 -0.2 39,909 + ABI39_RS00155 0.89 +0.0 39,909 + ABI39_RS00155 0.89 +0.2 39,910 - ABI39_RS00155 0.90 +0.3 39,910 - ABI39_RS00155 0.90 -0.4 39,914 + ABI39_RS00155 0.90 +1.1 39,938 + -1.6 39,940 + +0.7 39,975 - +0.1 40,117 - +0.2 40,118 + +0.4 40,118 + +0.3 40,184 + -0.4 40,218 + -0.6 40,218 + +0.7 40,253 - +0.1 40,665 - ABI39_RS00160 0.30 +1.0 40,967 + ABI39_RS00160 0.49 -0.2 41,003 + ABI39_RS00160 0.51 +1.1
Or see this region's nucleotide sequence