Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS15295

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
3,960,263	-		ABI39_RS15285	0.70	-0.8
3,960,263	-		ABI39_RS15285	0.70	-0.8
3,960,309	+		ABI39_RS15285	0.79	-0.1
3,960,313	+		ABI39_RS15285	0.80	-0.1
3,960,314	-		ABI39_RS15285	0.80	+0.3
3,960,414	+				+0.0
3,960,447	+				+0.1
3,960,447	+				+1.3
3,960,461	+				-0.3
3,960,464	-				+1.6
3,960,493	-				-0.5
3,960,518	-		ABI39_RS15290	0.12	+0.8
3,960,542	-		ABI39_RS15290	0.16	-0.5
3,960,546	+		ABI39_RS15290	0.17	+1.6
3,960,555	+		ABI39_RS15290	0.19	-1.3
3,960,612	-		ABI39_RS15290	0.28	+2.2
3,960,617	+		ABI39_RS15290	0.29	+1.2
3,960,736	+		ABI39_RS15290	0.49	-0.1
3,960,763	-		ABI39_RS15290	0.53	-0.5
3,960,794	+		ABI39_RS15290	0.58	-1.5
3,960,833	-		ABI39_RS15290	0.65	+1.6
3,960,944	+		ABI39_RS15290	0.83	+1.1
3,960,979	+		ABI39_RS15290	0.89	+1.8
3,960,979	+		ABI39_RS15290	0.89	+0.5
3,961,078	+				+1.8
3,961,124	+				+1.1
3,961,125	-				+1.4
3,961,184	-				+0.0
3,961,194	+				-0.2
3,961,194	+				-0.2
3,961,246	-				-1.4
3,961,394	+		ABI39_RS15295	0.15	-0.8
3,961,395	-		ABI39_RS15295	0.16	+0.8
3,961,395	-		ABI39_RS15295	0.16	-0.1
3,961,444	+		ABI39_RS15295	0.20	-0.6
3,961,446	+		ABI39_RS15295	0.21	-0.2
3,961,823	+		ABI39_RS15295	0.58	-1.8
3,961,846	+		ABI39_RS15295	0.60	+0.9
3,961,846	+		ABI39_RS15295	0.60	+0.5
3,961,846	+		ABI39_RS15295	0.60	+0.5
3,961,847	-		ABI39_RS15295	0.60	+0.7
3,961,849	-		ABI39_RS15295	0.60	-0.0
3,961,853	-		ABI39_RS15295	0.61	-0.4
3,961,853	-		ABI39_RS15295	0.61	+0.6
3,961,853	-		ABI39_RS15295	0.61	-4.2
3,961,881	+		ABI39_RS15295	0.64	-0.3
3,961,882	-		ABI39_RS15295	0.64	-0.8
3,961,944	-		ABI39_RS15295	0.70	-1.9
3,962,043	+		ABI39_RS15295	0.79	-1.7
3,962,044	-		ABI39_RS15295	0.80	+0.4
3,962,160	+				-0.9
3,962,300	+				-1.3
3,962,309	+				-0.5
3,962,310	-				+1.0
3,962,353	-				+1.5
3,962,380	-				-1.4
3,962,475	+				-0.8
3,962,505	+				+0.9
3,962,523	+				-0.1
3,962,525	+				-0.5
3,962,525	+				-1.4
3,962,602	+		ABI39_RS15300	0.13	-0.2
3,962,734	-		ABI39_RS15300	0.20	+1.3
3,962,893	+		ABI39_RS15300	0.28	-3.0
3,963,053	-		ABI39_RS15300	0.36	-0.7
3,963,198	-		ABI39_RS15300	0.43	+0.8
3,963,198	-		ABI39_RS15300	0.43	+0.5