Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS15005

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
3,890,238	+		ABI39_RS14995	0.76	+0.8
3,890,361	+				-1.3
3,890,362	-				+2.3
3,890,470	-		ABI39_RS15000	0.19	-1.0
3,890,569	-		ABI39_RS15000	0.37	-0.5
3,890,640	+		ABI39_RS15000	0.50	+1.1
3,890,682	+		ABI39_RS15000	0.57	-0.0
3,890,913	-				-0.2
3,890,924	-				-1.0
3,890,933	-				-0.9
3,890,950	+				-0.0
3,890,950	+				-0.4
3,890,953	+				+1.8
3,891,042	-				-0.3
3,891,259	+		ABI39_RS15005	0.14	-0.2
3,891,259	+		ABI39_RS15005	0.14	+0.9
3,891,274	+		ABI39_RS15005	0.15	+0.5
3,891,282	-		ABI39_RS15005	0.15	-0.3
3,891,385	+		ABI39_RS15005	0.22	+0.5
3,891,590	-		ABI39_RS15005	0.34	+2.8
3,891,638	-		ABI39_RS15005	0.37	-1.1
3,891,639	+		ABI39_RS15005	0.37	+1.5
3,891,639	+		ABI39_RS15005	0.37	+0.5
3,891,644	+		ABI39_RS15005	0.38	+0.5
3,891,726	-		ABI39_RS15005	0.43	+0.7
3,891,736	+		ABI39_RS15005	0.44	+1.2
3,891,772	-		ABI39_RS15005	0.46	-0.1
3,891,873	+		ABI39_RS15005	0.52	-0.3
3,891,884	-		ABI39_RS15005	0.53	-1.5
3,892,144	+		ABI39_RS15005	0.69	-0.1
3,892,259	+		ABI39_RS15005	0.76	+2.3
3,892,259	+		ABI39_RS15005	0.76	+0.6
3,892,270	+		ABI39_RS15005	0.77	-0.2
3,892,270	+		ABI39_RS15005	0.77	+0.2
3,892,440	-		ABI39_RS15005	0.88	+1.3
3,892,445	+		ABI39_RS15005	0.88	-0.1
3,892,445	+		ABI39_RS15005	0.88	-0.6
3,892,446	-		ABI39_RS15005	0.88	+0.4
3,892,535	-				-1.1
3,892,574	-				-0.2
3,892,583	+				-0.3
3,892,594	+				-0.1
3,892,620	-				+1.3
3,892,918	+		ABI39_RS15010	0.32	+1.5
3,892,952	+		ABI39_RS15010	0.36	-0.5
3,892,953	-		ABI39_RS15010	0.36	+1.5
3,893,075	+		ABI39_RS15010	0.50	-1.4
3,893,154	-		ABI39_RS15010	0.59	-0.1
3,893,321	-		ABI39_RS15010	0.79	-0.1
3,893,439	-				+0.1
3,893,483	-				+0.7
3,893,484	+				+1.5
3,893,485	-				-1.1
3,893,622	-				-0.1