Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS14605

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
3,780,749	+		ABI39_RS14600	0.71	-1.1
3,780,828	-		ABI39_RS14600	0.74	+2.6
3,780,888	-		ABI39_RS14600	0.77	-0.1
3,780,892	-		ABI39_RS14600	0.77	-1.3
3,780,939	-		ABI39_RS14600	0.79	-1.1
3,780,941	-		ABI39_RS14600	0.79	+0.1
3,780,963	+		ABI39_RS14600	0.80	-1.5
3,780,965	+		ABI39_RS14600	0.80	-1.5
3,780,965	-		ABI39_RS14600	0.80	-0.8
3,780,966	-		ABI39_RS14600	0.80	-0.3
3,781,002	-		ABI39_RS14600	0.81	-0.5
3,781,149	-		ABI39_RS14600	0.87	-0.3
3,781,497	+				+0.6
3,781,498	-				-0.0
3,781,506	+				-0.6
3,781,542	-				-2.3
3,781,553	-				+0.0
3,781,553	-				+0.5
3,781,572	-				+0.9
3,781,617	-				+0.2
3,781,636	+				-0.4
3,781,642	+				+1.5
3,781,643	-				+0.6
3,781,647	+				-1.0
3,781,682	+				+1.6
3,781,694	-				-1.6
3,781,716	+				-0.1
3,781,870	+				-2.8
3,781,906	+				+0.8
3,781,907	-				+0.8
3,781,935	+				+0.7
3,781,938	-				-1.3
3,781,948	+				-1.6
3,781,976	+				-1.2
3,782,065	+				+2.2
3,782,157	-		ABI39_RS14605	0.12	+0.7
3,782,195	+		ABI39_RS14605	0.13	-0.8
3,782,343	+		ABI39_RS14605	0.16	+1.7
3,782,344	-		ABI39_RS14605	0.16	+0.6
3,782,412	+		ABI39_RS14605	0.18	+2.3
3,782,413	-		ABI39_RS14605	0.18	-1.8
3,782,498	+		ABI39_RS14605	0.20	-0.8
3,782,535	+		ABI39_RS14605	0.21	+1.8
3,782,577	+		ABI39_RS14605	0.22	-2.2
3,782,897	+		ABI39_RS14605	0.29	-1.0
3,783,103	-		ABI39_RS14605	0.34	+0.5
3,783,106	+		ABI39_RS14605	0.34	+2.1
3,783,111	+		ABI39_RS14605	0.34	-2.0
3,783,224	+		ABI39_RS14605	0.36	-0.4
3,783,232	+		ABI39_RS14605	0.36	-0.5
3,783,273	-		ABI39_RS14605	0.37	+2.1
3,783,395	+		ABI39_RS14605	0.40	+1.4
3,783,466	+		ABI39_RS14605	0.42	+1.0
3,783,585	-		ABI39_RS14605	0.45	-0.7
3,783,650	+		ABI39_RS14605	0.46	-0.8
3,783,679	+		ABI39_RS14605	0.47	+0.3
3,783,728	-		ABI39_RS14605	0.48	+0.8
3,783,728	-		ABI39_RS14605	0.48	+0.1
3,783,732	+		ABI39_RS14605	0.48	+0.7
3,783,902	-		ABI39_RS14605	0.52	+0.2
3,783,968	-		ABI39_RS14605	0.53	-0.7
3,783,973	-		ABI39_RS14605	0.53	+0.7
3,783,973	-		ABI39_RS14605	0.53	-0.3
3,784,008	-		ABI39_RS14605	0.54	+0.7
3,784,021	+		ABI39_RS14605	0.54	+0.0
3,784,115	-		ABI39_RS14605	0.57	-1.1
3,784,338	-		ABI39_RS14605	0.62	-0.9
3,784,339	+		ABI39_RS14605	0.62	-0.8
3,784,346	-		ABI39_RS14605	0.62	-0.3
3,784,346	-		ABI39_RS14605	0.62	+1.2
3,784,375	-		ABI39_RS14605	0.62	-0.7
3,784,375	-		ABI39_RS14605	0.62	+0.5
3,784,397	-		ABI39_RS14605	0.63	+0.6
3,784,463	-		ABI39_RS14605	0.64	-0.2
3,784,683	+		ABI39_RS14605	0.69	-2.0
3,784,856	+		ABI39_RS14605	0.73	-0.3
3,784,895	+		ABI39_RS14605	0.74	-0.1
3,784,899	+		ABI39_RS14605	0.74	-0.2
3,784,899	+		ABI39_RS14605	0.74	-0.1
3,785,150	+		ABI39_RS14605	0.80	-0.7
3,785,281	+		ABI39_RS14605	0.83	-0.1
3,785,293	+		ABI39_RS14605	0.83	-0.8
3,785,334	-		ABI39_RS14605	0.84	+0.3
3,785,334	-		ABI39_RS14605	0.84	+0.3
3,785,370	+		ABI39_RS14605	0.85	-0.0
3,785,550	-		ABI39_RS14605	0.89	-0.3
3,785,614	+				-0.9
3,785,671	+				+0.6
3,785,672	-				+0.5
3,785,676	-				+1.3
3,785,770	+				-0.2
3,785,770	+				-0.4
3,785,773	+				-1.5
3,785,774	-				-0.0
3,785,775	+				+0.7
3,785,820	+				-0.8
3,785,853	+				+1.6
3,785,911	+				-1.3
3,786,002	+				+0.6
3,786,043	-				-1.7
3,786,102	+				+0.3
3,786,127	+				+0.7
3,786,284	-		ABI39_RS14610	0.10	-0.4
3,786,284	-		ABI39_RS14610	0.10	-1.4
3,786,537	-		ABI39_RS14610	0.39	+0.1
3,786,616	-		ABI39_RS14610	0.48	-0.8
3,786,747	+		ABI39_RS14610	0.62	+0.2
3,786,874	-		ABI39_RS14610	0.77	+0.2
3,786,911	-		ABI39_RS14610	0.81	+0.6
3,786,943	+		ABI39_RS14610	0.85	+1.0
3,786,952	+		ABI39_RS14610	0.86	-0.7
3,786,953	-		ABI39_RS14610	0.86	+0.5