Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS14040

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
3,651,800	-		ABI39_RS14035	0.71	+0.6
3,651,812	+		ABI39_RS14035	0.72	-0.4
3,652,145	+				-1.1
3,652,146	-				+0.6
3,652,146	-				-0.7
3,652,823	+				-3.9
3,652,893	+				-0.6
3,652,893	+				-0.7
3,652,897	+				+0.4
3,652,950	+				+0.5
3,652,950	+				+0.1
3,653,190	+		ABI39_RS14040	0.16	-0.3
3,653,190	+		ABI39_RS14040	0.16	-1.4
3,653,394	+		ABI39_RS14040	0.22	+2.2
3,653,395	-		ABI39_RS14040	0.22	+0.5
3,653,396	+		ABI39_RS14040	0.23	-1.6
3,653,396	+		ABI39_RS14040	0.23	-0.2
3,653,400	+		ABI39_RS14040	0.23	+0.2
3,653,435	-		ABI39_RS14040	0.24	+0.9
3,653,443	-		ABI39_RS14040	0.24	+0.3
3,653,706	+		ABI39_RS14040	0.32	-0.6
3,653,713	-		ABI39_RS14040	0.32	-0.8
3,653,839	-		ABI39_RS14040	0.36	-1.4
3,654,058	-		ABI39_RS14040	0.42	-0.0
3,654,085	-		ABI39_RS14040	0.43	+0.9
3,654,528	-		ABI39_RS14040	0.56	+1.5
3,654,650	+		ABI39_RS14040	0.60	-0.1
3,654,650	+		ABI39_RS14040	0.60	+1.4
3,654,651	-		ABI39_RS14040	0.60	-0.4
3,654,655	-		ABI39_RS14040	0.60	+2.5
3,654,658	+		ABI39_RS14040	0.60	-1.0
3,654,659	-		ABI39_RS14040	0.60	-0.8
3,654,726	-		ABI39_RS14040	0.62	+1.7
3,654,754	-		ABI39_RS14040	0.63	+1.2
3,655,049	-		ABI39_RS14040	0.72	+0.7
3,655,080	+		ABI39_RS14040	0.73	-0.9
3,655,108	-		ABI39_RS14040	0.74	-0.5
3,655,110	+		ABI39_RS14040	0.74	+0.8
3,655,111	-		ABI39_RS14040	0.74	-1.7
3,655,112	+		ABI39_RS14040	0.74	+1.6
3,655,140	+		ABI39_RS14040	0.75	+1.3
3,655,141	-		ABI39_RS14040	0.75	+0.2
3,655,144	-		ABI39_RS14040	0.75	-0.1
3,655,204	-		ABI39_RS14040	0.77	+0.2
3,655,319	+		ABI39_RS14040	0.80	+1.1
3,655,323	+		ABI39_RS14040	0.80	+1.3
3,655,429	-		ABI39_RS14040	0.83	+1.4
3,655,461	+		ABI39_RS14040	0.84	-0.0
3,655,464	-		ABI39_RS14040	0.84	-0.2
3,655,464	-		ABI39_RS14040	0.84	+0.3
3,655,483	+		ABI39_RS14040	0.85	+1.5
3,655,562	+		ABI39_RS14040	0.87	+0.3
3,655,562	+		ABI39_RS14040	0.87	-1.2
3,655,627	-		ABI39_RS14040	0.89	+0.2
3,655,844	+				+0.5
3,655,860	+				-1.2
3,655,862	+				+0.7
3,655,863	-				-1.1
3,655,863	-				-1.6
3,655,914	-				+1.5
3,655,914	-				+0.6
3,655,948	-				+2.2
3,655,979	+				+0.3
3,656,094	+				+0.6
3,656,346	+				+1.0
3,656,349	-				-0.6
3,656,367	+				-0.7
3,656,367	+				+0.0
3,656,368	-				+1.7
3,656,368	-				+0.2
3,656,404	+				+3.8
3,656,599	+				-1.0
3,656,602	+				-1.3
3,656,602	+				+0.5
3,656,602	+				-1.2
3,656,635	+				+1.7
3,656,669	+				+0.8
3,656,693	+				-0.0
3,656,738	+				-0.5
3,656,745	+				+0.3
3,656,749	+				-0.2
3,656,853	+		ABI39_RS14050	0.11	-0.2