Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS10320

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
2,754,979	-		ABI39_RS10315	0.43	-1.6
2,754,984	-		ABI39_RS10315	0.43	-0.6
2,754,986	+		ABI39_RS10315	0.43	+1.4
2,754,987	-		ABI39_RS10315	0.43	+0.5
2,755,028	-		ABI39_RS10315	0.46	+1.5
2,755,103	-		ABI39_RS10315	0.50	-0.1
2,755,199	-		ABI39_RS10315	0.56	+1.2
2,755,199	-		ABI39_RS10315	0.56	+1.0
2,755,207	+		ABI39_RS10315	0.56	+0.5
2,755,254	+		ABI39_RS10315	0.59	-2.9
2,755,256	+		ABI39_RS10315	0.59	+1.9
2,755,256	+		ABI39_RS10315	0.59	+0.7
2,755,257	-		ABI39_RS10315	0.59	-0.5
2,755,257	-		ABI39_RS10315	0.59	+0.5
2,755,333	+		ABI39_RS10315	0.64	-1.3
2,755,348	+		ABI39_RS10315	0.65	-0.9
2,755,351	-		ABI39_RS10315	0.65	-1.0
2,755,460	-		ABI39_RS10315	0.71	+0.2
2,755,472	-		ABI39_RS10315	0.72	-1.8
2,755,602	+		ABI39_RS10315	0.80	-0.5
2,755,602	+		ABI39_RS10315	0.80	-0.6
2,755,606	-		ABI39_RS10315	0.80	-0.1
2,755,660	-		ABI39_RS10315	0.83	-1.3
2,755,671	+		ABI39_RS10315	0.84	-0.5
2,755,678	-		ABI39_RS10315	0.84	+0.1
2,755,697	-		ABI39_RS10315	0.85	-1.1
2,755,735	+		ABI39_RS10315	0.88	+0.9
2,755,782	+				+1.3
2,755,783	-				-0.1
2,755,783	-				-0.8
2,755,847	+				-0.3
2,755,903	-				+0.2
2,755,962	+				-0.9
2,755,970	+				+1.5
2,755,976	-				+3.8
2,755,980	+				+0.7
2,755,981	-				+0.9
2,755,984	-				-1.6
2,755,984	-				-1.4
2,755,984	-				-0.3
2,755,985	+				+0.1
2,755,986	-				-0.5
2,755,986	-				-0.4
2,756,049	+				+1.7
2,756,049	+				-0.3
2,756,094	+				-0.5
2,756,095	-				+0.1
2,756,169	-		ABI39_RS10320	0.12	-1.0
2,756,244	+		ABI39_RS10320	0.17	-2.9
2,756,294	-		ABI39_RS10320	0.20	+2.1
2,756,314	+		ABI39_RS10320	0.21	-0.7
2,756,398	-		ABI39_RS10320	0.26	+0.0
2,756,424	+		ABI39_RS10320	0.28	-0.1
2,756,496	+		ABI39_RS10320	0.32	+0.4
2,756,613	-		ABI39_RS10320	0.39	+0.3
2,756,637	+		ABI39_RS10320	0.40	+0.5
2,756,724	+		ABI39_RS10320	0.45	-1.0
2,756,725	-		ABI39_RS10320	0.46	-1.3
2,756,727	+		ABI39_RS10320	0.46	-1.0
2,756,771	-		ABI39_RS10320	0.48	+0.1
2,756,844	+		ABI39_RS10320	0.53	-0.3
2,756,932	-		ABI39_RS10320	0.58	-0.5
2,756,962	+		ABI39_RS10320	0.60	+0.3
2,756,963	-		ABI39_RS10320	0.60	-0.2
2,757,006	-		ABI39_RS10320	0.62	+0.4
2,757,042	+		ABI39_RS10320	0.64	+0.1
2,757,129	+		ABI39_RS10320	0.70	-0.1
2,757,130	-		ABI39_RS10320	0.70	-0.2
2,757,181	+		ABI39_RS10320	0.73	-0.5
2,757,276	+		ABI39_RS10320	0.78	+0.3
2,757,277	-		ABI39_RS10320	0.78	-3.1
2,757,589	-				-0.6
2,757,672	+				+0.0
2,757,760	-				+0.4
2,757,760	-				+1.7
2,757,891	+				+1.1
2,757,983	-				+0.8
2,758,048	-				+0.8
2,758,097	-				+1.4
2,758,107	+				+0.4
2,758,156	-				+0.1
2,758,158	+				+2.3
2,758,164	+				+0.3
2,758,306	-		ABI39_RS10325	0.14	+4.3
2,758,382	-		ABI39_RS10325	0.18	+0.9
2,758,440	+		ABI39_RS10325	0.21	+0.3
2,758,467	+		ABI39_RS10325	0.22	+0.6
2,758,468	-		ABI39_RS10325	0.22	-0.6
2,758,512	+		ABI39_RS10325	0.25	-2.2
2,758,547	+		ABI39_RS10325	0.26	-0.0
2,758,547	+		ABI39_RS10325	0.26	+1.0
2,758,603	-		ABI39_RS10325	0.29	+0.3