Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS09125

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
2,451,411	+		ABI39_RS09120	0.70	+2.2
2,451,499	-		ABI39_RS09120	0.73	+0.1
2,451,505	-		ABI39_RS09120	0.73	+0.2
2,451,505	-		ABI39_RS09120	0.73	+0.5
2,451,603	+		ABI39_RS09120	0.76	+0.1
2,451,621	+		ABI39_RS09120	0.77	+0.4
2,451,622	-		ABI39_RS09120	0.77	+1.5
2,451,672	+		ABI39_RS09120	0.78	+0.0
2,451,934	-		ABI39_RS09120	0.86	+0.2
2,451,939	+		ABI39_RS09120	0.86	-1.6
2,451,940	-		ABI39_RS09120	0.86	-0.5
2,451,950	+		ABI39_RS09120	0.87	+2.5
2,451,951	-		ABI39_RS09120	0.87	+0.2
2,451,954	+		ABI39_RS09120	0.87	+0.5
2,451,955	-		ABI39_RS09120	0.87	+0.3
2,451,994	-		ABI39_RS09120	0.88	+1.6
2,451,998	-		ABI39_RS09120	0.88	+0.0
2,452,042	+		ABI39_RS09120	0.89	-1.0
2,452,043	-		ABI39_RS09120	0.89	-0.6
2,452,125	+				+2.9
2,452,206	+				+2.5
2,452,207	-				+2.1
2,452,267	-				-0.5
2,452,435	-				-0.5
2,452,436	+				+0.2
2,452,437	-				+1.3
2,452,443	-				-1.2
2,452,443	-				-0.0
2,452,445	+				-0.1
2,452,588	+		ABI39_RS09125	0.10	+0.2
2,452,654	-		ABI39_RS09125	0.14	+0.2
2,452,680	+		ABI39_RS09125	0.16	+0.7
2,452,681	-		ABI39_RS09125	0.16	+0.3
2,452,681	-		ABI39_RS09125	0.16	+0.4
2,452,681	-		ABI39_RS09125	0.16	-1.7
2,452,828	-		ABI39_RS09125	0.25	-0.9
2,452,899	+		ABI39_RS09125	0.29	+0.4
2,452,900	-		ABI39_RS09125	0.29	-1.3
2,452,914	+		ABI39_RS09125	0.30	+0.9
2,453,017	-		ABI39_RS09125	0.36	+0.9
2,453,033	+		ABI39_RS09125	0.37	+1.5
2,453,128	-		ABI39_RS09125	0.42	-0.1
2,453,164	+		ABI39_RS09125	0.45	+0.8
2,453,172	+		ABI39_RS09125	0.45	+0.5
2,453,173	-		ABI39_RS09125	0.45	-0.4
2,453,173	-		ABI39_RS09125	0.45	+0.1
2,453,228	+		ABI39_RS09125	0.48	-0.0
2,453,380	-		ABI39_RS09125	0.57	+1.4
2,453,406	-		ABI39_RS09125	0.59	+2.8
2,453,408	-		ABI39_RS09125	0.59	-0.4
2,453,421	-		ABI39_RS09125	0.60	+0.8
2,453,434	-		ABI39_RS09125	0.61	+0.2
2,453,434	-		ABI39_RS09125	0.61	-1.5
2,453,532	-		ABI39_RS09125	0.66	+0.5
2,453,533	+		ABI39_RS09125	0.66	+2.1
2,453,533	+		ABI39_RS09125	0.66	-0.1
2,453,534	-		ABI39_RS09125	0.66	+0.5
2,453,535	+		ABI39_RS09125	0.67	+0.8
2,453,536	-		ABI39_RS09125	0.67	-1.3
2,453,536	-		ABI39_RS09125	0.67	+1.1
2,453,628	+		ABI39_RS09125	0.72	-0.8
2,453,748	+		ABI39_RS09125	0.79	+0.7
2,453,924	+		ABI39_RS09125	0.90	+0.5
2,453,950	-				-0.6
2,454,001	-				-0.7
2,454,015	+				+1.2
2,454,015	+				+0.9
2,454,060	+				+1.7
2,454,102	+				-0.5
2,454,120	-				-0.9
2,454,122	-				+0.7
2,454,140	-				+1.1
2,454,182	-				+2.1
2,454,247	+				-0.4
2,454,247	+				-0.0
2,454,248	-				+0.3
2,454,378	+				+3.3
2,454,379	-				+2.3
2,454,379	-				-0.7
2,454,407	-				-1.3
2,454,456	+				-1.9
2,454,497	+		ABI39_RS09130	0.10	+1.5
2,454,528	+		ABI39_RS09130	0.11	-0.3
2,454,535	-		ABI39_RS09130	0.12	-0.1
2,454,658	-		ABI39_RS09130	0.16	-0.2
2,454,757	+		ABI39_RS09130	0.19	-0.2
2,454,773	-		ABI39_RS09130	0.19	+0.7
2,454,773	-		ABI39_RS09130	0.19	-1.4
2,454,779	-		ABI39_RS09130	0.20	-0.4
2,454,836	-		ABI39_RS09130	0.21	-0.8
2,454,840	+		ABI39_RS09130	0.22	+2.3
2,454,841	-		ABI39_RS09130	0.22	+0.8