Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS05235

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
1,459,918	+		ABI39_RS05230	0.34	-0.3
1,459,990	-		ABI39_RS05230	0.39	+0.6
1,460,162	+		ABI39_RS05230	0.52	+1.4
1,460,163	-		ABI39_RS05230	0.52	-0.7
1,460,189	+		ABI39_RS05230	0.54	-0.2
1,460,189	+		ABI39_RS05230	0.54	-0.1
1,460,196	-		ABI39_RS05230	0.54	-0.1
1,460,223	-		ABI39_RS05230	0.56	-1.1
1,460,330	+		ABI39_RS05230	0.64	-0.6
1,460,331	-		ABI39_RS05230	0.64	+0.2
1,460,331	-		ABI39_RS05230	0.64	+2.2
1,460,359	-		ABI39_RS05230	0.66	+2.4
1,460,505	-		ABI39_RS05230	0.77	-1.1
1,460,554	-		ABI39_RS05230	0.80	+0.1
1,460,600	-		ABI39_RS05230	0.84	-0.5
1,460,626	+		ABI39_RS05230	0.86	-0.2
1,460,681	-		ABI39_RS05230	0.90	+1.9
1,460,863	+				+1.1
1,461,021	-		ABI39_RS05235	0.23	+1.7
1,461,025	-		ABI39_RS05235	0.23	+0.6
1,461,025	-		ABI39_RS05235	0.23	+1.8
1,461,150	-		ABI39_RS05235	0.36	-0.3
1,461,220	+		ABI39_RS05235	0.43	+1.4
1,461,536	+		ABI39_RS05235	0.74	-0.7
1,461,539	-		ABI39_RS05235	0.75	+0.6
1,461,608	+		ABI39_RS05235	0.82	+0.4
1,461,796	+				-0.2
1,461,817	+				+1.6
1,461,995	+		ABI39_RS05240	0.16	+0.4
1,462,001	+		ABI39_RS05240	0.16	+0.1
1,462,022	-		ABI39_RS05240	0.18	-0.7
1,462,029	+		ABI39_RS05240	0.19	+0.9
1,462,038	-		ABI39_RS05240	0.20	-0.2
1,462,091	-		ABI39_RS05240	0.25	-0.3
1,462,091	-		ABI39_RS05240	0.25	-0.1
1,462,095	+		ABI39_RS05240	0.26	-0.2
1,462,096	-		ABI39_RS05240	0.26	+1.7
1,462,097	+		ABI39_RS05240	0.26	+0.2
1,462,098	-		ABI39_RS05240	0.26	+0.2
1,462,186	+		ABI39_RS05240	0.35	-0.3
1,462,191	+		ABI39_RS05240	0.35	-0.7
1,462,191	+		ABI39_RS05240	0.35	+0.1
1,462,192	-		ABI39_RS05240	0.36	-1.6
1,462,271	+		ABI39_RS05240	0.44	-0.1
1,462,272	-		ABI39_RS05240	0.44	-0.3
1,462,276	+		ABI39_RS05240	0.44	-1.3
1,462,389	+		ABI39_RS05240	0.55	+0.1
1,462,406	-		ABI39_RS05240	0.57	+1.5
1,462,410	-		ABI39_RS05240	0.58	-0.3
1,462,512	-		ABI39_RS05240	0.68	-1.1
1,462,551	-		ABI39_RS05240	0.72	+1.0
1,462,604	+		ABI39_RS05240	0.77	+0.5
1,462,605	-		ABI39_RS05240	0.77	-0.6
1,462,727	-		ABI39_RS05240	0.90	+0.8
1,462,771	-				+0.4
1,462,771	-				-1.1