Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS03360 and ABI39_RS03365 are separated by 114 nucleotides ABI39_RS03365 and ABI39_RS03370 are separated by 18 nucleotides ABI39_RS03370 and ABI39_RS03375 are separated by 50 nucleotides
ABI39_RS03360: ABI39_RS03360 - MATE family efflux transporter, at 971,253 to 972,545
_RS03360
ABI39_RS03365: ABI39_RS03365 - hypothetical protein, at 972,660 to 973,244
_RS03365
ABI39_RS03370: ABI39_RS03370 - helix-turn-helix transcriptional regulator, at 973,263 to 974,033
_RS03370
ABI39_RS03375: ABI39_RS03375 - alpha-galactosidase, at 974,084 to 975,691
_RS03375
Position (kb) 973
974
975 Strain fitness (log2 ratio) -2
-1
0
1
2 at 972.319 kb on + strand, within ABI39_RS03360 at 972.415 kb on - strand, within ABI39_RS03360 at 972.448 kb on + strand at 972.448 kb on + strand at 972.448 kb on + strand at 972.449 kb on - strand at 972.449 kb on - strand at 972.449 kb on - strand at 972.450 kb on + strand at 972.468 kb on + strand at 972.470 kb on + strand at 972.470 kb on + strand at 972.471 kb on - strand at 972.603 kb on + strand at 972.647 kb on + strand at 972.769 kb on + strand, within ABI39_RS03365 at 972.826 kb on - strand, within ABI39_RS03365 at 972.826 kb on - strand, within ABI39_RS03365 at 972.916 kb on + strand, within ABI39_RS03365 at 973.064 kb on + strand, within ABI39_RS03365 at 973.094 kb on - strand, within ABI39_RS03365 at 973.214 kb on + strand at 973.352 kb on + strand, within ABI39_RS03370 at 973.361 kb on + strand, within ABI39_RS03370 at 973.373 kb on + strand, within ABI39_RS03370 at 973.425 kb on + strand, within ABI39_RS03370 at 973.521 kb on - strand, within ABI39_RS03370 at 973.674 kb on + strand, within ABI39_RS03370 at 973.679 kb on + strand, within ABI39_RS03370 at 973.714 kb on + strand, within ABI39_RS03370 at 973.789 kb on + strand, within ABI39_RS03370 at 973.816 kb on - strand, within ABI39_RS03370 at 973.880 kb on + strand, within ABI39_RS03370 at 973.883 kb on - strand, within ABI39_RS03370 at 973.884 kb on + strand, within ABI39_RS03370 at 973.885 kb on - strand, within ABI39_RS03370 at 973.923 kb on + strand, within ABI39_RS03370 at 973.968 kb on + strand at 973.969 kb on - strand at 974.025 kb on + strand at 974.040 kb on - strand at 974.054 kb on + strand at 974.162 kb on - strand at 974.164 kb on - strand at 974.334 kb on + strand, within ABI39_RS03375 at 974.421 kb on + strand, within ABI39_RS03375 at 974.423 kb on + strand, within ABI39_RS03375 at 974.424 kb on - strand, within ABI39_RS03375 at 974.577 kb on - strand, within ABI39_RS03375 at 974.613 kb on - strand, within ABI39_RS03375 at 974.630 kb on + strand, within ABI39_RS03375 at 974.631 kb on - strand, within ABI39_RS03375 at 974.657 kb on - strand, within ABI39_RS03375 at 974.663 kb on - strand, within ABI39_RS03375 at 974.685 kb on + strand, within ABI39_RS03375 at 974.685 kb on + strand, within ABI39_RS03375 at 974.742 kb on + strand, within ABI39_RS03375 at 974.743 kb on - strand, within ABI39_RS03375 at 974.769 kb on + strand, within ABI39_RS03375 at 974.832 kb on - strand, within ABI39_RS03375 at 974.954 kb on - strand, within ABI39_RS03375 at 975.016 kb on + strand, within ABI39_RS03375
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) remove 972,319 + ABI39_RS03360 0.82 -1.0 972,415 - ABI39_RS03360 0.90 -0.2 972,448 + +0.7 972,448 + -0.6 972,448 + -1.7 972,449 - -0.4 972,449 - -0.9 972,449 - -0.7 972,450 + +0.0 972,468 + +2.0 972,470 + -1.8 972,470 + +1.1 972,471 - +0.8 972,603 + +1.0 972,647 + +0.8 972,769 + ABI39_RS03365 0.19 -1.1 972,826 - ABI39_RS03365 0.28 +2.0 972,826 - ABI39_RS03365 0.28 -0.3 972,916 + ABI39_RS03365 0.44 +0.4 973,064 + ABI39_RS03365 0.69 -0.5 973,094 - ABI39_RS03365 0.74 +1.2 973,214 + -0.6 973,352 + ABI39_RS03370 0.12 +2.2 973,361 + ABI39_RS03370 0.13 -0.0 973,373 + ABI39_RS03370 0.14 -1.2 973,425 + ABI39_RS03370 0.21 +0.0 973,521 - ABI39_RS03370 0.33 +1.0 973,674 + ABI39_RS03370 0.53 +0.1 973,679 + ABI39_RS03370 0.54 -0.2 973,714 + ABI39_RS03370 0.58 -0.9 973,789 + ABI39_RS03370 0.68 +0.4 973,816 - ABI39_RS03370 0.72 +1.0 973,880 + ABI39_RS03370 0.80 -1.0 973,883 - ABI39_RS03370 0.80 +0.6 973,884 + ABI39_RS03370 0.81 -0.6 973,885 - ABI39_RS03370 0.81 +2.3 973,923 + ABI39_RS03370 0.86 +1.5 973,968 + +1.5 973,969 - -0.5 974,025 + +0.6 974,040 - -0.9 974,054 + +1.1 974,162 - +0.1 974,164 - -0.1 974,334 + ABI39_RS03375 0.16 -1.4 974,421 + ABI39_RS03375 0.21 -0.0 974,423 + ABI39_RS03375 0.21 -0.3 974,424 - ABI39_RS03375 0.21 +0.0 974,577 - ABI39_RS03375 0.31 -0.2 974,613 - ABI39_RS03375 0.33 -0.4 974,630 + ABI39_RS03375 0.34 +1.1 974,631 - ABI39_RS03375 0.34 -0.7 974,657 - ABI39_RS03375 0.36 +1.8 974,663 - ABI39_RS03375 0.36 -1.3 974,685 + ABI39_RS03375 0.37 +1.2 974,685 + ABI39_RS03375 0.37 +0.4 974,742 + ABI39_RS03375 0.41 +0.1 974,743 - ABI39_RS03375 0.41 +1.5 974,769 + ABI39_RS03375 0.43 -0.8 974,832 - ABI39_RS03375 0.47 -1.1 974,954 - ABI39_RS03375 0.54 -0.2 975,016 + ABI39_RS03375 0.58 +0.0
Or see this region's nucleotide sequence