Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS03280 and ABI39_RS03290 are separated by 61 nucleotides ABI39_RS03290 and ABI39_RS03295 are separated by 43 nucleotides
ABI39_RS03280: ABI39_RS03280 - DUF1016 family protein, at 949,299 to 950,400
_RS03280
ABI39_RS03290: ABI39_RS03290 - endonuclease/exonuclease/phosphatase family protein, at 950,462 to 951,307
_RS03290
ABI39_RS03295: ABI39_RS03295 - SusD/RagB family nutrient-binding outer membrane lipoprotein, at 951,351 to 953,120
_RS03295
Position (kb) 950
951
952 Strain fitness (log2 ratio) -2
-1
0
1
2 at 949.711 kb on + strand, within ABI39_RS03280 at 949.816 kb on + strand, within ABI39_RS03280 at 949.816 kb on + strand, within ABI39_RS03280 at 949.871 kb on + strand, within ABI39_RS03280 at 949.911 kb on + strand, within ABI39_RS03280 at 950.182 kb on - strand, within ABI39_RS03280 at 950.186 kb on - strand, within ABI39_RS03280 at 950.206 kb on + strand, within ABI39_RS03280 at 950.207 kb on - strand, within ABI39_RS03280 at 950.207 kb on - strand, within ABI39_RS03280 at 950.207 kb on - strand, within ABI39_RS03280 at 950.208 kb on + strand, within ABI39_RS03280 at 950.209 kb on - strand, within ABI39_RS03280 at 950.277 kb on - strand, within ABI39_RS03280 at 950.401 kb on + strand at 950.658 kb on + strand, within ABI39_RS03290 at 950.687 kb on - strand, within ABI39_RS03290 at 950.819 kb on + strand, within ABI39_RS03290 at 950.852 kb on + strand, within ABI39_RS03290 at 950.963 kb on - strand, within ABI39_RS03290 at 950.982 kb on + strand, within ABI39_RS03290 at 950.983 kb on - strand, within ABI39_RS03290 at 951.418 kb on - strand at 951.494 kb on + strand at 951.700 kb on + strand, within ABI39_RS03295 at 951.700 kb on + strand, within ABI39_RS03295 at 952.054 kb on - strand, within ABI39_RS03295 at 952.215 kb on - strand, within ABI39_RS03295 at 952.237 kb on + strand, within ABI39_RS03295
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) remove 949,711 + ABI39_RS03280 0.37 -0.1 949,816 + ABI39_RS03280 0.47 +0.9 949,816 + ABI39_RS03280 0.47 +2.1 949,871 + ABI39_RS03280 0.52 +0.7 949,911 + ABI39_RS03280 0.56 -0.0 950,182 - ABI39_RS03280 0.80 +0.4 950,186 - ABI39_RS03280 0.80 +0.7 950,206 + ABI39_RS03280 0.82 -0.7 950,207 - ABI39_RS03280 0.82 -0.2 950,207 - ABI39_RS03280 0.82 -0.0 950,207 - ABI39_RS03280 0.82 -0.7 950,208 + ABI39_RS03280 0.82 +0.6 950,209 - ABI39_RS03280 0.83 +0.9 950,277 - ABI39_RS03280 0.89 -0.5 950,401 + +0.4 950,658 + ABI39_RS03290 0.23 -0.5 950,687 - ABI39_RS03290 0.27 -1.5 950,819 + ABI39_RS03290 0.42 -0.2 950,852 + ABI39_RS03290 0.46 -1.6 950,963 - ABI39_RS03290 0.59 -0.4 950,982 + ABI39_RS03290 0.61 -0.5 950,983 - ABI39_RS03290 0.62 +0.9 951,418 - -0.1 951,494 + +0.5 951,700 + ABI39_RS03295 0.20 +0.5 951,700 + ABI39_RS03295 0.20 -0.9 952,054 - ABI39_RS03295 0.40 -1.3 952,215 - ABI39_RS03295 0.49 -2.5 952,237 + ABI39_RS03295 0.50 -1.3
Or see this region's nucleotide sequence