Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS03195 and ABI39_RS03200 are separated by 13 nucleotides ABI39_RS03200 and ABI39_RS03205 are separated by 221 nucleotides ABI39_RS03205 and ABI39_RS03210 are separated by 92 nucleotides
ABI39_RS03195: ABI39_RS03195 - S1 RNA-binding domain-containing protein, at 926,801 to 931,000
_RS03195
ABI39_RS03200: ABI39_RS03200 - helix-turn-helix transcriptional regulator, at 931,014 to 931,226
_RS03200
ABI39_RS03205: ABI39_RS03205 - site-specific integrase, at 931,448 to 932,458
_RS03205
ABI39_RS03210: ABI39_RS03210 - helix-turn-helix domain-containing protein, at 932,551 to 933,456
_RS03210
Position (kb) 931
932
933 Strain fitness (log2 ratio) -1
0
1
2
3 at 930.524 kb on + strand, within ABI39_RS03195 at 930.525 kb on - strand, within ABI39_RS03195 at 930.564 kb on - strand, within ABI39_RS03195 at 930.640 kb on - strand at 930.652 kb on - strand at 930.659 kb on + strand at 930.661 kb on + strand at 930.828 kb on - strand at 930.950 kb on + strand at 930.975 kb on - strand at 930.978 kb on - strand at 930.986 kb on + strand at 931.001 kb on - strand at 931.010 kb on + strand at 931.023 kb on - strand at 931.025 kb on - strand at 931.125 kb on - strand, within ABI39_RS03200 at 931.192 kb on - strand, within ABI39_RS03200 at 931.192 kb on - strand, within ABI39_RS03200 at 931.300 kb on - strand at 931.302 kb on + strand at 931.302 kb on + strand at 931.303 kb on - strand at 931.303 kb on - strand at 931.305 kb on + strand at 931.307 kb on + strand at 931.416 kb on + strand at 931.434 kb on + strand at 931.523 kb on + strand at 931.523 kb on + strand at 931.690 kb on + strand, within ABI39_RS03205 at 931.696 kb on + strand, within ABI39_RS03205 at 931.932 kb on + strand, within ABI39_RS03205 at 931.937 kb on + strand, within ABI39_RS03205 at 931.961 kb on - strand, within ABI39_RS03205 at 931.961 kb on - strand, within ABI39_RS03205 at 931.966 kb on - strand, within ABI39_RS03205 at 932.435 kb on + strand at 932.450 kb on - strand at 932.613 kb on + strand at 932.712 kb on - strand, within ABI39_RS03210 at 932.768 kb on + strand, within ABI39_RS03210 at 932.945 kb on + strand, within ABI39_RS03210 at 933.017 kb on - strand, within ABI39_RS03210 at 933.106 kb on - strand, within ABI39_RS03210 at 933.106 kb on - strand, within ABI39_RS03210 at 933.113 kb on - strand, within ABI39_RS03210 at 933.212 kb on - strand, within ABI39_RS03210 at 933.243 kb on + strand, within ABI39_RS03210 at 933.243 kb on + strand, within ABI39_RS03210 at 933.244 kb on - strand, within ABI39_RS03210 at 933.250 kb on - strand, within ABI39_RS03210
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) remove 930,524 + ABI39_RS03195 0.89 +2.8 930,525 - ABI39_RS03195 0.89 -0.3 930,564 - ABI39_RS03195 0.90 -1.0 930,640 - +1.0 930,652 - -1.0 930,659 + -0.2 930,661 + -0.2 930,828 - -0.1 930,950 + -0.9 930,975 - -1.5 930,978 - -1.0 930,986 + +0.2 931,001 - +0.0 931,010 + -0.8 931,023 - -1.2 931,025 - +1.0 931,125 - ABI39_RS03200 0.52 +0.7 931,192 - ABI39_RS03200 0.84 +3.7 931,192 - ABI39_RS03200 0.84 +0.7 931,300 - +0.1 931,302 + -0.2 931,302 + -0.2 931,303 - +0.0 931,303 - -1.3 931,305 + +1.1 931,307 + -0.9 931,416 + -0.9 931,434 + -0.4 931,523 + -0.6 931,523 + +0.3 931,690 + ABI39_RS03205 0.24 +0.0 931,696 + ABI39_RS03205 0.25 -0.1 931,932 + ABI39_RS03205 0.48 +1.5 931,937 + ABI39_RS03205 0.48 -0.1 931,961 - ABI39_RS03205 0.51 +0.8 931,961 - ABI39_RS03205 0.51 -0.7 931,966 - ABI39_RS03205 0.51 -0.8 932,435 + +0.5 932,450 - +0.7 932,613 + -0.5 932,712 - ABI39_RS03210 0.18 +0.7 932,768 + ABI39_RS03210 0.24 +1.3 932,945 + ABI39_RS03210 0.43 -0.0 933,017 - ABI39_RS03210 0.51 +3.5 933,106 - ABI39_RS03210 0.61 -0.9 933,106 - ABI39_RS03210 0.61 +1.4 933,113 - ABI39_RS03210 0.62 -0.4 933,212 - ABI39_RS03210 0.73 -0.7 933,243 + ABI39_RS03210 0.76 -1.5 933,243 + ABI39_RS03210 0.76 -0.8 933,244 - ABI39_RS03210 0.76 +0.1 933,250 - ABI39_RS03210 0.77 +1.7
Or see this region's nucleotide sequence