Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS02805

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS02800 and ABI39_RS02805 are separated by 17 nucleotidesABI39_RS02805 and ABI39_RS02810 are separated by 207 nucleotides ABI39_RS02800: ABI39_RS02800 - family 20 glycosylhydrolase, at 808,153 to 810,468 _RS02800 ABI39_RS02805: ABI39_RS02805 - sulfatase, at 810,486 to 812,069 _RS02805 ABI39_RS02810: ABI39_RS02810 - RagB/SusD family nutrient uptake outer membrane protein, at 812,277 to 814,112 _RS02810 Position (kb) 810 811 812 813Strain fitness (log2 ratio) -1 0 1 2 3at 809.526 kb on + strand, within ABI39_RS02800at 809.646 kb on + strand, within ABI39_RS02800at 809.647 kb on - strand, within ABI39_RS02800at 809.707 kb on + strand, within ABI39_RS02800at 809.733 kb on - strand, within ABI39_RS02800at 809.806 kb on + strand, within ABI39_RS02800at 809.848 kb on + strand, within ABI39_RS02800at 809.929 kb on - strand, within ABI39_RS02800at 810.121 kb on - strand, within ABI39_RS02800at 810.133 kb on - strand, within ABI39_RS02800at 810.133 kb on - strand, within ABI39_RS02800at 810.390 kb on + strandat 810.390 kb on + strandat 810.390 kb on + strandat 810.598 kb on + strandat 810.664 kb on - strand, within ABI39_RS02805at 810.692 kb on + strand, within ABI39_RS02805at 810.696 kb on + strand, within ABI39_RS02805at 810.740 kb on - strand, within ABI39_RS02805at 810.870 kb on + strand, within ABI39_RS02805at 810.941 kb on + strand, within ABI39_RS02805at 810.963 kb on - strand, within ABI39_RS02805at 810.998 kb on - strand, within ABI39_RS02805at 811.032 kb on - strand, within ABI39_RS02805at 811.043 kb on + strand, within ABI39_RS02805at 811.199 kb on - strand, within ABI39_RS02805at 811.205 kb on + strand, within ABI39_RS02805at 811.236 kb on - strand, within ABI39_RS02805at 811.298 kb on + strand, within ABI39_RS02805at 811.428 kb on - strand, within ABI39_RS02805at 811.433 kb on + strand, within ABI39_RS02805at 811.548 kb on + strand, within ABI39_RS02805at 811.550 kb on + strand, within ABI39_RS02805at 811.550 kb on + strand, within ABI39_RS02805at 811.550 kb on + strand, within ABI39_RS02805at 811.551 kb on - strand, within ABI39_RS02805at 811.552 kb on + strand, within ABI39_RS02805at 811.604 kb on - strand, within ABI39_RS02805at 811.744 kb on - strand, within ABI39_RS02805at 811.745 kb on + strand, within ABI39_RS02805at 811.746 kb on + strand, within ABI39_RS02805at 811.746 kb on - strand, within ABI39_RS02805at 811.781 kb on + strand, within ABI39_RS02805at 811.781 kb on + strand, within ABI39_RS02805at 811.781 kb on + strand, within ABI39_RS02805at 811.782 kb on - strand, within ABI39_RS02805at 811.841 kb on + strand, within ABI39_RS02805at 811.952 kb on - strandat 812.119 kb on + strandat 812.119 kb on + strandat 812.120 kb on - strandat 812.154 kb on - strandat 812.266 kb on - strandat 812.266 kb on - strandat 812.285 kb on + strandat 812.286 kb on - strandat 812.297 kb on + strandat 812.298 kb on - strandat 812.309 kb on - strandat 812.331 kb on + strandat 812.436 kb on - strandat 812.462 kb on + strand, within ABI39_RS02810at 812.713 kb on + strand, within ABI39_RS02810at 812.738 kb on + strand, within ABI39_RS02810at 812.739 kb on - strand, within ABI39_RS02810at 812.769 kb on - strand, within ABI39_RS02810at 812.777 kb on + strand, within ABI39_RS02810at 812.815 kb on + strand, within ABI39_RS02810at 812.995 kb on - strand, within ABI39_RS02810at 812.999 kb on - strand, within ABI39_RS02810at 812.999 kb on - strand, within ABI39_RS02810at 813.050 kb on - strand, within ABI39_RS02810at 813.064 kb on + strand, within ABI39_RS02810

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
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809,526 + ABI39_RS02800 0.59 -1.2
809,646 + ABI39_RS02800 0.64 +0.5
809,647 - ABI39_RS02800 0.65 -0.3
809,707 + ABI39_RS02800 0.67 +0.8
809,733 - ABI39_RS02800 0.68 -0.9
809,806 + ABI39_RS02800 0.71 -0.5
809,848 + ABI39_RS02800 0.73 +0.2
809,929 - ABI39_RS02800 0.77 -0.1
810,121 - ABI39_RS02800 0.85 +0.8
810,133 - ABI39_RS02800 0.85 +0.8
810,133 - ABI39_RS02800 0.85 +0.4
810,390 + +0.0
810,390 + +1.2
810,390 + -0.7
810,598 + +0.0
810,664 - ABI39_RS02805 0.11 +0.3
810,692 + ABI39_RS02805 0.13 +0.3
810,696 + ABI39_RS02805 0.13 +0.8
810,740 - ABI39_RS02805 0.16 -0.6
810,870 + ABI39_RS02805 0.24 +1.0
810,941 + ABI39_RS02805 0.29 -1.4
810,963 - ABI39_RS02805 0.30 -0.5
810,998 - ABI39_RS02805 0.32 +1.6
811,032 - ABI39_RS02805 0.34 +0.2
811,043 + ABI39_RS02805 0.35 +2.8
811,199 - ABI39_RS02805 0.45 +1.6
811,205 + ABI39_RS02805 0.45 +0.8
811,236 - ABI39_RS02805 0.47 +0.1
811,298 + ABI39_RS02805 0.51 +0.6
811,428 - ABI39_RS02805 0.59 -0.9
811,433 + ABI39_RS02805 0.60 +3.7
811,548 + ABI39_RS02805 0.67 +0.1
811,550 + ABI39_RS02805 0.67 +0.7
811,550 + ABI39_RS02805 0.67 +0.0
811,550 + ABI39_RS02805 0.67 -0.2
811,551 - ABI39_RS02805 0.67 +1.5
811,552 + ABI39_RS02805 0.67 -0.5
811,604 - ABI39_RS02805 0.71 +0.9
811,744 - ABI39_RS02805 0.79 -0.1
811,745 + ABI39_RS02805 0.79 -0.5
811,746 + ABI39_RS02805 0.80 +1.8
811,746 - ABI39_RS02805 0.80 +1.4
811,781 + ABI39_RS02805 0.82 +1.5
811,781 + ABI39_RS02805 0.82 +0.1
811,781 + ABI39_RS02805 0.82 +0.2
811,782 - ABI39_RS02805 0.82 +0.4
811,841 + ABI39_RS02805 0.86 -0.1
811,952 - -0.1
812,119 + -0.4
812,119 + +0.5
812,120 - +2.1
812,154 - +0.4
812,266 - -1.3
812,266 - +0.3
812,285 + -0.2
812,286 - +0.8
812,297 + +0.6
812,298 - -0.3
812,309 - -0.9
812,331 + -0.1
812,436 - +2.0
812,462 + ABI39_RS02810 0.10 -0.2
812,713 + ABI39_RS02810 0.24 +0.4
812,738 + ABI39_RS02810 0.25 +0.6
812,739 - ABI39_RS02810 0.25 -1.1
812,769 - ABI39_RS02810 0.27 +1.7
812,777 + ABI39_RS02810 0.27 +0.0
812,815 + ABI39_RS02810 0.29 -0.6
812,995 - ABI39_RS02810 0.39 -0.9
812,999 - ABI39_RS02810 0.39 +0.6
812,999 - ABI39_RS02810 0.39 +1.0
813,050 - ABI39_RS02810 0.42 +0.5
813,064 + ABI39_RS02810 0.43 +1.7

Or see this region's nucleotide sequence