Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01995 and ABI39_RS02000 are separated by 11 nucleotides ABI39_RS02000 and ABI39_RS02005 are separated by 121 nucleotides
ABI39_RS01995: ABI39_RS01995 - DeoR/GlpR transcriptional regulator, at 584,008 to 584,763
_RS01995
ABI39_RS02000: ABI39_RS02000 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 584,775 to 585,389
_RS02000
ABI39_RS02005: ABI39_RS02005 - DUF5060 domain-containing protein, at 585,511 to 587,115
_RS02005
Position (kb) 584
585
586 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 583.789 kb on - strand at 583.828 kb on + strand at 583.829 kb on - strand at 583.834 kb on + strand at 583.835 kb on - strand at 583.843 kb on - strand at 583.886 kb on - strand at 584.061 kb on + strand at 584.128 kb on + strand, within ABI39_RS01995 at 584.204 kb on - strand, within ABI39_RS01995 at 584.423 kb on + strand, within ABI39_RS01995 at 584.943 kb on - strand, within ABI39_RS02000 at 585.067 kb on - strand, within ABI39_RS02000 at 585.121 kb on - strand, within ABI39_RS02000 at 585.127 kb on - strand, within ABI39_RS02000 at 585.135 kb on - strand, within ABI39_RS02000 at 585.151 kb on - strand, within ABI39_RS02000 at 585.225 kb on + strand, within ABI39_RS02000 at 585.226 kb on - strand, within ABI39_RS02000 at 585.409 kb on + strand at 585.410 kb on - strand at 585.543 kb on - strand at 585.577 kb on + strand at 585.578 kb on - strand at 585.771 kb on - strand, within ABI39_RS02005 at 585.771 kb on - strand, within ABI39_RS02005 at 585.789 kb on + strand, within ABI39_RS02005 at 585.814 kb on - strand, within ABI39_RS02005 at 585.988 kb on - strand, within ABI39_RS02005 at 585.993 kb on - strand, within ABI39_RS02005 at 586.064 kb on - strand, within ABI39_RS02005 at 586.300 kb on - strand, within ABI39_RS02005 at 586.338 kb on + strand, within ABI39_RS02005 at 586.353 kb on - strand, within ABI39_RS02005 at 586.358 kb on - strand, within ABI39_RS02005
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) remove 583,789 - -3.3 583,828 + +1.0 583,829 - +0.8 583,834 + -0.5 583,835 - -2.0 583,843 - -1.2 583,886 - -2.4 584,061 + -0.9 584,128 + ABI39_RS01995 0.16 -1.7 584,204 - ABI39_RS01995 0.26 -2.4 584,423 + ABI39_RS01995 0.55 -2.8 584,943 - ABI39_RS02000 0.27 -0.9 585,067 - ABI39_RS02000 0.47 -0.1 585,121 - ABI39_RS02000 0.56 -0.0 585,127 - ABI39_RS02000 0.57 -0.1 585,135 - ABI39_RS02000 0.59 +0.1 585,151 - ABI39_RS02000 0.61 -1.5 585,225 + ABI39_RS02000 0.73 +0.7 585,226 - ABI39_RS02000 0.73 -0.6 585,409 + -0.7 585,410 - +0.8 585,543 - -2.6 585,577 + -0.2 585,578 - -1.2 585,771 - ABI39_RS02005 0.16 +0.8 585,771 - ABI39_RS02005 0.16 +2.1 585,789 + ABI39_RS02005 0.17 -0.1 585,814 - ABI39_RS02005 0.19 -0.3 585,988 - ABI39_RS02005 0.30 -0.1 585,993 - ABI39_RS02005 0.30 +0.1 586,064 - ABI39_RS02005 0.34 -0.2 586,300 - ABI39_RS02005 0.49 -0.3 586,338 + ABI39_RS02005 0.52 +1.0 586,353 - ABI39_RS02005 0.52 -0.3 586,358 - ABI39_RS02005 0.53 +0.2
Or see this region's nucleotide sequence