Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS00125

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS00115 and ABI39_RS00120 are separated by 112 nucleotidesABI39_RS00120 and ABI39_RS00125 are separated by 55 nucleotidesABI39_RS00125 and ABI39_RS00130 are separated by 26 nucleotidesABI39_RS00130 and ABI39_RS00135 are separated by 7 nucleotides ABI39_RS00115: ABI39_RS00115 - DUF4249 domain-containing protein, at 26,782 to 27,768 _RS00115 ABI39_RS00120: ABI39_RS00120 - RNA polymerase sigma-70 factor, at 27,881 to 28,447 _RS00120 ABI39_RS00125: ABI39_RS00125 - hypothetical protein, at 28,503 to 28,910 _RS00125 ABI39_RS00130: ABI39_RS00130 - FecR domain-containing protein, at 28,937 to 29,827 _RS00130 ABI39_RS00135: ABI39_RS00135 - TonB-dependent receptor, at 29,835 to 32,510 _RS00135 Position (kb) 28 29Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 27.513 kb on - strand, within ABI39_RS00115at 27.529 kb on + strand, within ABI39_RS00115at 27.529 kb on + strand, within ABI39_RS00115at 27.531 kb on + strand, within ABI39_RS00115at 27.531 kb on + strand, within ABI39_RS00115at 27.533 kb on + strand, within ABI39_RS00115at 27.534 kb on - strand, within ABI39_RS00115at 27.534 kb on - strand, within ABI39_RS00115at 27.534 kb on - strand, within ABI39_RS00115at 27.537 kb on + strand, within ABI39_RS00115at 27.538 kb on - strand, within ABI39_RS00115at 27.539 kb on + strand, within ABI39_RS00115at 27.684 kb on + strandat 27.702 kb on + strandat 27.702 kb on + strandat 27.726 kb on - strandat 27.726 kb on - strandat 27.766 kb on + strandat 27.792 kb on + strandat 27.868 kb on - strandat 27.971 kb on + strand, within ABI39_RS00120at 27.971 kb on + strand, within ABI39_RS00120at 27.971 kb on + strand, within ABI39_RS00120at 27.972 kb on - strand, within ABI39_RS00120at 27.972 kb on - strand, within ABI39_RS00120at 28.106 kb on + strand, within ABI39_RS00120at 28.106 kb on + strand, within ABI39_RS00120at 28.107 kb on - strand, within ABI39_RS00120at 28.107 kb on - strand, within ABI39_RS00120at 28.114 kb on + strand, within ABI39_RS00120at 28.116 kb on + strand, within ABI39_RS00120at 28.117 kb on - strand, within ABI39_RS00120at 28.278 kb on + strand, within ABI39_RS00120at 28.306 kb on + strand, within ABI39_RS00120at 28.354 kb on + strand, within ABI39_RS00120at 28.357 kb on + strand, within ABI39_RS00120at 28.359 kb on + strand, within ABI39_RS00120at 28.374 kb on + strand, within ABI39_RS00120at 28.579 kb on - strand, within ABI39_RS00125at 28.590 kb on + strand, within ABI39_RS00125at 28.590 kb on + strand, within ABI39_RS00125at 28.593 kb on - strand, within ABI39_RS00125at 28.594 kb on + strand, within ABI39_RS00125at 28.594 kb on + strand, within ABI39_RS00125at 28.595 kb on - strand, within ABI39_RS00125at 28.631 kb on + strand, within ABI39_RS00125at 28.631 kb on + strand, within ABI39_RS00125at 28.731 kb on - strand, within ABI39_RS00125at 28.809 kb on - strand, within ABI39_RS00125at 28.816 kb on + strand, within ABI39_RS00125at 28.833 kb on - strand, within ABI39_RS00125at 28.833 kb on - strand, within ABI39_RS00125at 28.837 kb on + strand, within ABI39_RS00125at 28.912 kb on - strandat 28.983 kb on + strandat 29.039 kb on - strand, within ABI39_RS00130at 29.042 kb on - strand, within ABI39_RS00130at 29.044 kb on - strand, within ABI39_RS00130at 29.102 kb on - strand, within ABI39_RS00130at 29.137 kb on - strand, within ABI39_RS00130at 29.180 kb on - strand, within ABI39_RS00130at 29.202 kb on + strand, within ABI39_RS00130at 29.202 kb on + strand, within ABI39_RS00130at 29.203 kb on - strand, within ABI39_RS00130at 29.248 kb on - strand, within ABI39_RS00130at 29.302 kb on - strand, within ABI39_RS00130at 29.624 kb on - strand, within ABI39_RS00130at 29.670 kb on + strand, within ABI39_RS00130at 29.853 kb on - strandat 29.894 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
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27,513 - ABI39_RS00115 0.74 +0.2
27,529 + ABI39_RS00115 0.76 -2.2
27,529 + ABI39_RS00115 0.76 -1.0
27,531 + ABI39_RS00115 0.76 +5.1
27,531 + ABI39_RS00115 0.76 +0.9
27,533 + ABI39_RS00115 0.76 +0.3
27,534 - ABI39_RS00115 0.76 +0.7
27,534 - ABI39_RS00115 0.76 +1.5
27,534 - ABI39_RS00115 0.76 +0.9
27,537 + ABI39_RS00115 0.76 -1.2
27,538 - ABI39_RS00115 0.77 -0.0
27,539 + ABI39_RS00115 0.77 +0.6
27,684 + +1.1
27,702 + +0.4
27,702 + -0.5
27,726 - -1.8
27,726 - +0.0
27,766 + +0.5
27,792 + +0.4
27,868 - +1.0
27,971 + ABI39_RS00120 0.16 +0.3
27,971 + ABI39_RS00120 0.16 -0.1
27,971 + ABI39_RS00120 0.16 +0.8
27,972 - ABI39_RS00120 0.16 -0.3
27,972 - ABI39_RS00120 0.16 -0.2
28,106 + ABI39_RS00120 0.40 -0.7
28,106 + ABI39_RS00120 0.40 -0.8
28,107 - ABI39_RS00120 0.40 -1.9
28,107 - ABI39_RS00120 0.40 +1.1
28,114 + ABI39_RS00120 0.41 +2.4
28,116 + ABI39_RS00120 0.41 +0.4
28,117 - ABI39_RS00120 0.42 +0.3
28,278 + ABI39_RS00120 0.70 -1.0
28,306 + ABI39_RS00120 0.75 +0.8
28,354 + ABI39_RS00120 0.83 +1.3
28,357 + ABI39_RS00120 0.84 +1.1
28,359 + ABI39_RS00120 0.84 -0.8
28,374 + ABI39_RS00120 0.87 +0.2
28,579 - ABI39_RS00125 0.19 -0.4
28,590 + ABI39_RS00125 0.21 +0.6
28,590 + ABI39_RS00125 0.21 -0.3
28,593 - ABI39_RS00125 0.22 -0.3
28,594 + ABI39_RS00125 0.22 -1.6
28,594 + ABI39_RS00125 0.22 -0.7
28,595 - ABI39_RS00125 0.23 -1.0
28,631 + ABI39_RS00125 0.31 -0.4
28,631 + ABI39_RS00125 0.31 +1.5
28,731 - ABI39_RS00125 0.56 -1.4
28,809 - ABI39_RS00125 0.75 -0.4
28,816 + ABI39_RS00125 0.77 +0.1
28,833 - ABI39_RS00125 0.81 -1.3
28,833 - ABI39_RS00125 0.81 +0.6
28,837 + ABI39_RS00125 0.82 +0.9
28,912 - -0.3
28,983 + -0.3
29,039 - ABI39_RS00130 0.11 -1.5
29,042 - ABI39_RS00130 0.12 -0.2
29,044 - ABI39_RS00130 0.12 -0.6
29,102 - ABI39_RS00130 0.19 -0.9
29,137 - ABI39_RS00130 0.22 +0.0
29,180 - ABI39_RS00130 0.27 -0.4
29,202 + ABI39_RS00130 0.30 +0.2
29,202 + ABI39_RS00130 0.30 +0.3
29,203 - ABI39_RS00130 0.30 -0.6
29,248 - ABI39_RS00130 0.35 -1.0
29,302 - ABI39_RS00130 0.41 +0.4
29,624 - ABI39_RS00130 0.77 +0.4
29,670 + ABI39_RS00130 0.82 -0.1
29,853 - +1.0
29,894 - -0.3

Or see this region's nucleotide sequence