Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS21435 and ABI39_RS21440 are separated by 90 nucleotides ABI39_RS21440 and ABI39_RS21445 are separated by 123 nucleotides ABI39_RS21445 and ABI39_RS21450 are separated by 23 nucleotides
ABI39_RS21435: ABI39_RS21435 - DEAD/DEAH box helicase family protein, at 5,289,854 to 5,292,556
_RS21435
ABI39_RS21440: ABI39_RS21440 - helix-turn-helix transcriptional regulator, at 5,292,647 to 5,292,856
_RS21440
ABI39_RS21445: ABI39_RS21445 - GIY-YIG nuclease family protein, at 5,292,980 to 5,293,807
_RS21445
ABI39_RS21450: ABI39_RS21450 - hypothetical protein, at 5,293,831 to 5,294,229
_RS21450
Position (kb) 5292
5293 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5291.650 kb on + strand, within ABI39_RS21435 at 5291.700 kb on - strand, within ABI39_RS21435 at 5291.710 kb on + strand, within ABI39_RS21435 at 5291.711 kb on - strand, within ABI39_RS21435 at 5291.900 kb on + strand, within ABI39_RS21435 at 5291.928 kb on - strand, within ABI39_RS21435 at 5291.994 kb on + strand, within ABI39_RS21435 at 5292.082 kb on - strand, within ABI39_RS21435 at 5292.082 kb on - strand, within ABI39_RS21435 at 5292.116 kb on - strand, within ABI39_RS21435 at 5292.230 kb on + strand, within ABI39_RS21435 at 5292.230 kb on + strand, within ABI39_RS21435 at 5292.230 kb on + strand, within ABI39_RS21435 at 5292.256 kb on + strand, within ABI39_RS21435 at 5292.312 kb on - strand at 5292.364 kb on + strand at 5292.466 kb on + strand at 5292.467 kb on - strand at 5292.565 kb on + strand at 5292.569 kb on - strand at 5292.569 kb on - strand at 5292.570 kb on + strand at 5292.572 kb on + strand at 5292.573 kb on - strand at 5292.653 kb on + strand at 5292.654 kb on - strand at 5292.698 kb on + strand, within ABI39_RS21440 at 5292.733 kb on + strand, within ABI39_RS21440 at 5292.748 kb on + strand, within ABI39_RS21440 at 5292.757 kb on - strand, within ABI39_RS21440 at 5292.793 kb on + strand, within ABI39_RS21440 at 5292.873 kb on - strand at 5292.894 kb on - strand at 5292.906 kb on - strand at 5292.949 kb on + strand at 5292.975 kb on + strand at 5292.979 kb on + strand at 5293.001 kb on + strand at 5293.075 kb on - strand, within ABI39_RS21445 at 5293.084 kb on + strand, within ABI39_RS21445 at 5293.116 kb on + strand, within ABI39_RS21445 at 5293.138 kb on - strand, within ABI39_RS21445 at 5293.179 kb on + strand, within ABI39_RS21445 at 5293.179 kb on + strand, within ABI39_RS21445 at 5293.180 kb on - strand, within ABI39_RS21445 at 5293.254 kb on + strand, within ABI39_RS21445 at 5293.254 kb on + strand, within ABI39_RS21445 at 5293.255 kb on - strand, within ABI39_RS21445 at 5293.302 kb on + strand, within ABI39_RS21445 at 5293.303 kb on - strand, within ABI39_RS21445 at 5293.310 kb on - strand, within ABI39_RS21445 at 5293.310 kb on - strand, within ABI39_RS21445 at 5293.351 kb on - strand, within ABI39_RS21445 at 5293.360 kb on + strand, within ABI39_RS21445 at 5293.497 kb on + strand, within ABI39_RS21445 at 5293.498 kb on - strand, within ABI39_RS21445 at 5293.498 kb on - strand, within ABI39_RS21445 at 5293.574 kb on - strand, within ABI39_RS21445 at 5293.640 kb on + strand, within ABI39_RS21445 at 5293.669 kb on - strand, within ABI39_RS21445 at 5293.813 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) remove 5,291,650 + ABI39_RS21435 0.66 -2.0 5,291,700 - ABI39_RS21435 0.68 +0.8 5,291,710 + ABI39_RS21435 0.69 +0.4 5,291,711 - ABI39_RS21435 0.69 +0.4 5,291,900 + ABI39_RS21435 0.76 -0.4 5,291,928 - ABI39_RS21435 0.77 -0.2 5,291,994 + ABI39_RS21435 0.79 -0.9 5,292,082 - ABI39_RS21435 0.82 +0.3 5,292,082 - ABI39_RS21435 0.82 -0.2 5,292,116 - ABI39_RS21435 0.84 -0.4 5,292,230 + ABI39_RS21435 0.88 -0.9 5,292,230 + ABI39_RS21435 0.88 +0.6 5,292,230 + ABI39_RS21435 0.88 -0.8 5,292,256 + ABI39_RS21435 0.89 +0.2 5,292,312 - +0.1 5,292,364 + -0.6 5,292,466 + +0.6 5,292,467 - +1.9 5,292,565 + -0.5 5,292,569 - +0.5 5,292,569 - -0.9 5,292,570 + +0.4 5,292,572 + +0.7 5,292,573 - +1.3 5,292,653 + +0.6 5,292,654 - +0.4 5,292,698 + ABI39_RS21440 0.24 -0.1 5,292,733 + ABI39_RS21440 0.41 +1.9 5,292,748 + ABI39_RS21440 0.48 +1.6 5,292,757 - ABI39_RS21440 0.52 +0.3 5,292,793 + ABI39_RS21440 0.70 -0.3 5,292,873 - -1.2 5,292,894 - +1.3 5,292,906 - -2.3 5,292,949 + -0.0 5,292,975 + +0.8 5,292,979 + -0.6 5,293,001 + +0.8 5,293,075 - ABI39_RS21445 0.11 -0.8 5,293,084 + ABI39_RS21445 0.13 -0.3 5,293,116 + ABI39_RS21445 0.16 +0.2 5,293,138 - ABI39_RS21445 0.19 +1.9 5,293,179 + ABI39_RS21445 0.24 +0.4 5,293,179 + ABI39_RS21445 0.24 -1.3 5,293,180 - ABI39_RS21445 0.24 +0.9 5,293,254 + ABI39_RS21445 0.33 -0.5 5,293,254 + ABI39_RS21445 0.33 +0.3 5,293,255 - ABI39_RS21445 0.33 -1.5 5,293,302 + ABI39_RS21445 0.39 -2.1 5,293,303 - ABI39_RS21445 0.39 +0.1 5,293,310 - ABI39_RS21445 0.40 -0.2 5,293,310 - ABI39_RS21445 0.40 -0.6 5,293,351 - ABI39_RS21445 0.45 +1.2 5,293,360 + ABI39_RS21445 0.46 +1.0 5,293,497 + ABI39_RS21445 0.62 -1.1 5,293,498 - ABI39_RS21445 0.63 +0.7 5,293,498 - ABI39_RS21445 0.63 -0.2 5,293,574 - ABI39_RS21445 0.72 -0.1 5,293,640 + ABI39_RS21445 0.80 -0.6 5,293,669 - ABI39_RS21445 0.83 -1.3 5,293,813 + -0.2
Or see this region's nucleotide sequence