Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20110

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
4,966,873	+		ABI39_RS20105	0.14	+1.2
4,966,945	-		ABI39_RS20105	0.22	-4.0
4,966,945	-		ABI39_RS20105	0.22	-1.4
4,966,967	-		ABI39_RS20105	0.24	-3.2
4,967,011	+		ABI39_RS20105	0.29	-1.7
4,967,364	-		ABI39_RS20105	0.66	-3.9
4,967,453	+		ABI39_RS20105	0.76	-2.6
4,967,453	+		ABI39_RS20105	0.76	-0.9
4,967,453	+		ABI39_RS20105	0.76	-2.1
4,967,454	-		ABI39_RS20105	0.76	-3.0
4,967,458	+		ABI39_RS20105	0.76	-3.6
4,967,605	+				-4.0
4,967,698	+				-3.7
4,967,764	+		ABI39_RS20110	0.14	-3.4
4,967,768	+		ABI39_RS20110	0.15	-4.5
4,967,771	-		ABI39_RS20110	0.16	+0.8
4,967,775	+		ABI39_RS20110	0.17	-4.6
4,967,854	-		ABI39_RS20110	0.35	-4.2
4,968,004	-		ABI39_RS20110	0.70	+0.1
4,968,123	-				-2.0
4,968,178	-				+0.3
4,968,197	+				+0.1
4,968,307	+				-0.5
4,968,364	+				+0.8
4,968,446	+		ABI39_RS20115	0.11	+0.3
4,968,542	-		ABI39_RS20115	0.19	+0.1
4,968,714	-		ABI39_RS20115	0.34	+0.1
4,968,918	+		ABI39_RS20115	0.51	+0.3
4,969,045	+		ABI39_RS20115	0.61	+1.3
4,969,046	-		ABI39_RS20115	0.61	+0.5
4,969,093	+		ABI39_RS20115	0.65	-0.4
4,969,113	-		ABI39_RS20115	0.67	+0.1