Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS17045

Experiment: Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
4,316,245	-				+0.7
4,316,305	+				+1.0
4,316,332	+				-0.1
4,316,545	-				+0.7
4,316,547	-				-0.0
4,316,548	+				+0.3
4,316,549	-				+0.4
4,316,590	-				-0.5
4,316,590	-				-1.1
4,316,645	+		ABI39_RS17040	0.16	+0.2
4,316,713	+		ABI39_RS17040	0.28	-1.7
4,316,849	-		ABI39_RS17040	0.51	-1.5
4,316,936	-		ABI39_RS17040	0.67	-1.2
4,316,939	+		ABI39_RS17040	0.67	-0.5
4,316,977	-		ABI39_RS17040	0.74	-0.7
4,317,054	+		ABI39_RS17040	0.87	-0.6
4,317,061	+		ABI39_RS17040	0.89	+0.2
4,317,062	-		ABI39_RS17040	0.89	+1.6
4,317,062	-		ABI39_RS17040	0.89	-0.6
4,317,066	+		ABI39_RS17040	0.89	+1.5
4,317,096	-				-0.1
4,317,155	-				+1.1
4,317,213	-				+0.3
4,317,301	-				+0.3
4,317,329	-				-0.4
4,317,491	-		ABI39_RS17045	0.17	-0.4
4,317,677	+		ABI39_RS17045	0.26	+1.5
4,317,677	+		ABI39_RS17045	0.26	+1.4
4,317,743	+		ABI39_RS17045	0.30	+0.5
4,317,743	+		ABI39_RS17045	0.30	+0.1
4,317,912	+		ABI39_RS17045	0.38	-2.0
4,317,913	-		ABI39_RS17045	0.38	+1.5
4,318,090	-		ABI39_RS17045	0.47	+0.5
4,318,135	-		ABI39_RS17045	0.49	+0.4
4,318,243	-		ABI39_RS17045	0.54	+2.0
4,318,246	+		ABI39_RS17045	0.54	-0.2
4,318,279	+		ABI39_RS17045	0.56	+1.0
4,318,447	-		ABI39_RS17045	0.64	+1.1
4,318,616	-		ABI39_RS17045	0.73	-1.0
4,318,764	+		ABI39_RS17045	0.80	-3.0
4,319,037	+				-0.4
4,319,037	+				-0.5
4,319,037	+				-0.8
4,319,044	-				+1.6
4,319,163	+				+1.0
4,319,183	-				-0.4
4,319,435	+		ABI39_RS17050	0.13	-0.4
4,319,485	-		ABI39_RS17050	0.16	+1.4
4,319,505	-		ABI39_RS17050	0.18	+2.5
4,319,598	-		ABI39_RS17050	0.23	+0.6
4,319,598	-		ABI39_RS17050	0.23	-0.7
4,319,746	-		ABI39_RS17050	0.32	+0.1
4,319,748	+		ABI39_RS17050	0.32	-0.5
4,319,856	+		ABI39_RS17050	0.38	-0.8
4,319,886	+		ABI39_RS17050	0.40	-0.9
4,319,892	+		ABI39_RS17050	0.40	-0.9
4,319,929	+		ABI39_RS17050	0.42	-0.9
4,320,018	+		ABI39_RS17050	0.48	+0.1
4,320,056	+		ABI39_RS17050	0.50	+0.7
4,320,057	-		ABI39_RS17050	0.50	+1.8
4,320,058	+		ABI39_RS17050	0.50	-1.7
4,320,058	+		ABI39_RS17050	0.50	-0.7
4,320,058	+		ABI39_RS17050	0.50	+0.0
4,320,059	-		ABI39_RS17050	0.50	-0.2
4,320,063	+		ABI39_RS17050	0.50	-0.4
4,320,064	-		ABI39_RS17050	0.50	+1.6
4,320,150	+		ABI39_RS17050	0.55	-0.5
4,320,151	-		ABI39_RS17050	0.55	+2.0
4,320,161	+		ABI39_RS17050	0.56	+1.3
4,320,162	-		ABI39_RS17050	0.56	+1.0